PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03811.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HB-other
Protein Properties Length: 384aa    MW: 42609.6 Da    PI: 7.0309
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03811.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.12.2e-061474755
               --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
   Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
               ft+ ++ e+e+  ++  n+ p ++    LA+k            ++ +qV +WFqNrR+  
  PK03811.1 14 FTPIEVAEMEAILQEhsNSMPGRDVLVGLADKFsdspdrkgkiTVQMKQVWNWFQNRRYAI 74
               77777888888888655888888888888888888888888889999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-11476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-61379IPR009057Homeodomain-like
PROSITE profilePS500719.2481377IPR001356Homeobox domain
CDDcd000861.91E-41375No hitNo description
PfamPF167191.3E-40127253IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTPIEVA EMEAILQEHS NSMPGRDVLV GLADKFSDSP DRKGKITVQM  60
KQVWNWFQNR RYAIRAKLSR NPGKLSVSSM PREDPMPMRN MPQSLTAPMP NPSVSGAGRV  120
ASENSVMEFE AKSGRDGAWY DVANFFSHRY LDSGDPEVLI RFAGFGPEED EWVNVKKHVR  180
QRSLPCESSE CVAVLPGDLI LCFQEGKEQA LYFDAHVLDA QRRRHDVRGC RCRFLVRYDH  240
DQSEEIVPLR KVCRRPETDY RLQQLHAVNE AASAEQQKSN MDSFTVNALR ANIPALETAQ  300
KQQHHHHHHH TTDATLVTPV ALSNNNASFA PQASSVLEPK KAETSNAVDA ANSNTVPSGG  360
NSGASVSLIS NNTVISEDNP TEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A6e-461272574134SHH1 SAWADEE
4iur_B6e-461272574134SHH1 SAWADEE
4iut_A6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B6e-461272574134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899221.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-149SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2P5F4T90.0A0A2P5F4T9_TREOI; Octamer-binding transcription factor
STRINGXP_010098455.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-139sequence-specific DNA binding transcription factors;sequence-specific DNA binding