 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PK03289.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
| Family |
NF-X1 |
| Protein Properties |
Length: 284aa MW: 32028.4 Da PI: 8.5455 |
| Description |
NF-X1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PK03289.3 | genome | CCBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-NF-X1 | 20.6 | 9.4e-07 | 64 | 82 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20
C+ H+C+ +CH+G+CppC++
PK03289.3 64 CS-HPCSLPCHPGDCPPCKA 82
99.***************95 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
CVGQHIGADR MMVCSNKMQF SCENLCGNFL PCGNHYCTNS CHALKTQPCE ECNLSCEKER 60
TPLCSHPCSL PCHPGDCPPC KALVKRSCHC GSMVHVFECM YYNSLSEKGQ MTARSCGGPC 120
HRKLPNCTHL CPETCHPGQC PSPEKCSKKV NVRCRCQTLK KEWQCYEVQA AHRHAGSDPK 180
DIIKSQYGLG LLPCNSDCKI KLQAIDSELQ QRKSKAVEVK VPDTEKHVPK RKRRRERVQE 240
TKQISRLQKV ASTIKWLLLF AIILVALIAS LYCGYKGILW LNDW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 229 | 234 | KRKRRR |
| 2 | 230 | 234 | RKRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G05660.1 | 1e-115 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
