PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03147.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family M-type_MADS
Protein Properties Length: 353aa    MW: 40118.1 Da    PI: 7.0633
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03147.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF658e-211053245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               + en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  PK03147.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
               6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.563153IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-28160IPR002100Transcription factor, MADS-box
CDDcd002661.38E-25282No hitNo description
SuperFamilySSF554559.42E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-16323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCSGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEELSNQ  120
ATLFQTQLSE IHKRLSYWTN PDKIDSVEHL GQMENSLRES LNQIRSHKEN LQKQQFMSLD  180
CTSQFQNGLH IPFRVGADQQ LQPLSWMPNN DTQNIVLPDD PNLLSHRDME CSTSSSFGSY  240
SGYFGMGRNP EISNSGQENG MVTDLSRTTP MRLQLNGGQF PYAPYNLNVL SDQKFQPQTE  300
MNPQENTVDY QVNGNFEVPR HGYETNHQNS WASTAGPYAV SMLDETLYPQ HPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-12192190MEF2 CHIMERA
6byy_B2e-12192190MEF2 CHIMERA
6byy_C2e-12192190MEF2 CHIMERA
6byy_D2e-12192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029431.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-117AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLW9S8B50.0W9S8B5_9ROSA; MADS-box transcription factor 16
STRINGXP_010108684.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.24e-96AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]