PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK03141.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 258aa MW: 29117.3 Da PI: 4.2073 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.6 | 3.3e-06 | 211 | 244 | 12 | 45 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVk 45 +e+L e+F++n ps++ +e L+k+lgL+ ++V+ PK03141.2 211 VERLREVFAENELPSRDVKENLSKELGLDSEKVT 244 789**************************99995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-5 | 197 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 198 | 243 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.84E-4 | 200 | 243 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
XNAHLGTYFS MNNSWEVSHS ETGFVLKCSS LFTSSQIVEL FSVKDVFEEE AALPEDANAS 60 LHPDVEWPSD DSGDENYDPE RKENSSSISG EDTDDHVWEG EFSTDGSVGS DESDGGIVCG 120 RRQRRDVDYR KLYDEMFGKD APPCEQISED EDWGPSKRKR RAKESDAAST LMTLFESEKV 180 NSDVDVEEVE GQLPPEAQIR RSFFRIPRIA VERLREVFAE NELPSRDVKE NLSKELGLDS 240 EKVTLSNTHE YSTAHKSI |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893916.1 | 5e-94 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_015893988.1 | 4e-94 | pathogenesis-related homeodomain protein isoform X2 | ||||
TrEMBL | A0A2P5C6N9 | 1e-110 | A0A2P5C6N9_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010087997.1 | 9e-91 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29940.1 | 2e-43 | pathogenesis related homeodomain protein A |