PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03141.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HB-PHD
Protein Properties Length: 593aa    MW: 68125.8 Da    PI: 7.8214
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03141.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.12.3e-113784191253
                HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                +e+L e+F++n  ps++ +e L+k+lgL+ ++V+ WF+N R+
  PK03141.1 378 VERLREVFAENELPSRDVKENLSKELGLDSEKVSKWFKNARY 419
                689*************************************97 PP
2PHD40.75.4e-14134188150
                SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
        PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                +C+ C+   +  +++++lCd +C+++fH+kCl+++l++e++p g   w+C+ C++
  PK03141.1 134 FCAKCKLreAFPDNDIILCDgTCNSAFHQKCLDPPLDTESIPPGdqGWFCRFCEC 188
                699999854455********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.99E-14126191IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.8E-12130189IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.433132189IPR019787Zinc finger, PHD-finger
PfamPF006283.0E-11134188IPR019787Zinc finger, PHD-finger
SMARTSM002494.8E-9134187IPR001965Zinc finger, PHD-type
CDDcd155041.04E-30134186No hitNo description
PROSITE patternPS013590135186IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.212364424IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-11364418IPR009057Homeodomain-like
SMARTSM003891.8E-8366428IPR001356Homeobox domain
SuperFamilySSF466894.06E-10367430IPR009057Homeodomain-like
CDDcd000861.93E-8367419No hitNo description
PfamPF000467.4E-9378419IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MRGTKSSKKH SLLKCQYEKI EPNNEKRRRR QKRKKARNEE LDEASRLQRR TRYLLNQMKL  60
EQNLIDAYSG EGWKGQSREK IKPENELQRA KKQILKYKLG IRDAIRQLDS LSSVGSIEDS  120
VMAPDGSVYH EHIFCAKCKL REAFPDNDII LCDGTCNSAF HQKCLDPPLD TESIPPGDQG  180
WFCRFCECRM EILEAVNAHL GTYFSMNNSW EDVFEEEAAL PEDANASLHP DVEWPSDDSG  240
DENYDPERKE NSSSISGEDT DDHVWEGEFS TDGSVGSDES DGGIVCGRRQ RRDVDYRKLY  300
DEMFGKDAPP CEQISEDEDW GPSKRKRRAK ESDAASTLMT LFESEKVNSD VDVEEVEGQL  360
PPEAQIRRSF FRIPRIAVER LREVFAENEL PSRDVKENLS KELGLDSEKV SKWFKNARYL  420
ALKTRKAEGV KQVHTLTPGL PKHPRFENMM KEAPDLVMSD NTSTETVVHV VKNKKLSQRK  480
RPKSLSSPSK MKHRKNSSVM SPANRKKESM ELGDDVKLKK CSKERSKMRK RFNLFAGFGS  540
EDAEAEMERL CKVTGRLETI KQKLLKFQNN KAKNPWNEPS VIYVPVAELK EKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733RRRQKRK
22734RRRQKRKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087997.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-159PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2P5C6N90.0A0A2P5C6N9_TREOI; Octamer-binding transcription factor
STRINGXP_010087997.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-160pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]