PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK03107.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 27687.9 Da PI: 10.5843 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 63 | 98 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e+++da +++G++ W+++a+ + +Rt +++ PK03107.4 63 QWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRTVEMV 98 6*****************99.*********.***9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-10 | 59 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.086 | 59 | 112 | IPR017884 | SANT domain |
SMART | SM00717 | 0.004 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 63 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 63 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.79E-6 | 64 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAPTKKSRVN KRYGSAISYS PEKEVGNSAK NKQRGSISFS PDGGNSNKSL QRKKKLSDKL 60 GSQWSKGELE RFYDAYRKYG KDWRKVAAAV RNRTVEMVEA LYSMNRAYLS LPEGTASVVG 120 LIAMMTDHYN VLEGSDSDQE SNDGSGISRK LPNRKRGRDN FNTSKDLFQS YSVASTDGCL 180 SLLKRKRSDG SQPRVVGKRT PRFPVSYSHK RDYRENQMSP NRKGKKAEND NDDAHVAALA 240 LTEASQR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026911.1 | 1e-121 | protein ALWAYS EARLY 2 | ||||
Swissprot | Q6A333 | 8e-68 | ALY2_ARATH; Protein ALWAYS EARLY 2 | ||||
TrEMBL | A0A2P5AJ64 | 1e-142 | A0A2P5AJ64_PARAD; Protein LIN-9/Protein ALWAYS EARLY | ||||
STRING | EMJ09328 | 1e-103 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1783 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-65 | DNA binding |
Publications ? help Back to Top | |||
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