PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK03107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 1167aa MW: 129597 Da PI: 9.8826 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 63 | 98 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e+++da +++G++ W+++a+ + +Rt +++ PK03107.1 63 QWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRTVEMV 98 6*****************99.*********.***9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-9 | 59 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.086 | 59 | 112 | IPR017884 | SANT domain |
SMART | SM00717 | 0.004 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-7 | 63 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-5 | 63 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.88E-5 | 64 | 98 | No hit | No description |
SMART | SM01135 | 1.2E-57 | 641 | 742 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.9E-33 | 641 | 741 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1167 aa Download sequence Send to blast |
MAPTKKSRVN KRYGSAISYS PEKEVGNSAK NKQRGSISFS PDGGNSNKSL QRKKKLSDKL 60 GSQWSKGELE RFYDAYRKYG KDWRKVAAAV RNRTVEMVEA LYSMNRAYLS LPEGTASVVG 120 LIAMMTDHYN VLEGSDSDQE SNDGSGISRK LPNRKRGRDN FNTSKDLFQS HSVASTDGCL 180 SLLKRKRSDG SQPRVVGKRT PRFPVSYSHK RDYRENQMSP NRKGKKAEND NDDAHVAALA 240 LTEASQRVGS PQVSTPYKHI SSSPAQSWER LALSSQRLRD TSVDDDWFEG SVGSRGAENG 300 DYGKDTSSLM AMEGVGTVEV HQKGKKFYGK KEKVEDDDGG EACSGTEEGK SISGLKGKIG 360 VEFSNAKVER VSPQSQRKKS KKLFFGDESS AIDALQTLAN LSLMMPPCTV ESESSVQLKE 420 ERTTLDAEEK SSVPEATSQV RNKNKLSGAK QKAPPTISKK STLGRDANGD IINDSTTGQL 480 LSENKLLKRR RKSSIPKMSK VEARLDAILK GTFKTEVICE EESKPVIKGK RSSQSSTPSK 540 QWKSVGSSEG SLSGEFKRTG SGTDLAVSTT QVPAASQVNL PTKQRSKRKM YLPQTLPTKD 600 IKSTQNIVKR KVNKNFTLPE EKLSCFLSST MVRRWCTFEW FYSAIDYPWF AKREFEEYLN 660 HVGLGHIPRL TRVEWGVIRS SLGKPRRFSE LFLREERKKL KQYRESVREH YTELRNGVRE 720 GLPTDLARPL TVGQRVIAIH PKTREVHDGS VLTVDHDKCR IQFDHPDIGV EFVMDVDCMP 780 SNPMENMPES LRRQNSTIDN FSLTSKEPLP NGNLNFGGPL MFASSGHMEK GPTSINTLGK 840 HGKGDITHAV SHMKAAAIDI VSSTQPIAYS QSLIVENNQA READIRALSE LTRALDKKEA 900 LLMELRKTNS EILENQNNGD YSLKDCEMFK KHYATVLVQL NEASSQVSSA LHDLRQRNTH 960 PGNVLFPGPK IPINSTTHSN VPSSFDNFSI SQDSASNLIE IVKGSTIKAQ SMVDAAIQAF 1020 SLCKEGEDAY LKIREALDSM DNKLMTSESR ALTNKPHEQV NGTSVHRYSL IKSEPVITGD 1080 SSASNLRTDS DKSEAKVPSG IITSCVASLL MIQTCTERQY PPSEVAQILD TAVTRLYPLS 1140 SQNIQIYREI QSYMGRIKTQ ILALVPT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026911.1 | 0.0 | protein ALWAYS EARLY 2 | ||||
TrEMBL | A0A2P5AMS0 | 0.0 | A0A2P5AMS0_TREOI; Protein LIN-9/Protein ALWAYS EARLY | ||||
STRING | XP_008246389.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1783 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |