PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02936.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 293aa MW: 33263.3 Da PI: 6.8856

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02936.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl PK02936.1 40 KPRLRWTADLHDRFVDAVTKLGGPEKATPKAVLRLMGLKGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-31	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.538	37	97	IPR017930	Myb domain
SuperFamily	SSF46689	8.96E-16	40	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-24	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-9	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-22	140	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
XEEFCSPLLG YLESLFLSGR NIMERSFGYE NGIVMTRDPK PRLRWTADLH DRFVDAVTKL 60 GGPEKATPKA VLRLMGLKGL TLYHLKSHLQ KYRLGQQTRK QNLVEHSKES NGCSYVQFGS 120 HSSVTSTTSS RGDKEQCDIP ITEALKHQNE VQKRLEEQLE VQKKLQMRIE AQGKYLQAIL 180 EKAQKSLSLD MNGPGNIEVA KAQLTDFNLA LSNFMENMTE VEEKASIIDQ MGGVYRKQND 240 SSFKIYQESN REDSEDSKLK DTNTIHFDLN TKGGYDFVGA NSLEFEPKML SYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	40	93	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	40	93	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	40	93	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	40	93	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	40	93	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010110423.2	1e-149	myb family transcription factor PHL11
Swissprot	C0SVS4	5e-86	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2P5FA92	1e-163	A0A2P5FA92_TREOI; Octamer-binding transcription factor
STRING	XP_010110423.1	1e-148	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	2e-83	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]