PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02707.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 466aa    MW: 52554.7 Da    PI: 6.1092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02707.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.92.1e-138494631374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA++v++g+le+a+  L+++s+l spdgd+mqR++ayf+eALa r+++s+++ly+al++++    ++see+ ++++f+e++P+lk++++++Nq
  PK02707.1  49 LIQLLVACANHVAAGSLENANIGLEHISHLTSPDGDSMQRIVAYFAEALADRMLKSWPGLYRALNSTKIV--SVSEEIIVQRYFFELCPFLKLAYVITNQ 146
                689*************************************************************999887..6*************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+ege+++HiiD++ sq++Q + Llq+L++Rpegpp+lRiTgv++    +ke le+++ rL++ Ae+l++pf+f++ ++++le+l++e+Lrvk+gE
  PK02707.1 147 AIFEAMEGEKMIHIIDLNSSQPAQMIDLLQTLSARPEGPPHLRITGVHE----QKEVLEQMALRLTEEAEKLDIPFQFTP-IVSKLENLDVESLRVKTGE 241
                *************************************************....9**************************.7999*************** PP

       GRAS 201 alaVnlvlqlhrll.................................................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                alaV+ vlqlh+ll                                                 +  v+ + +  ++L ++++lsPkv+vv+eqe++ n+ 
  PK02707.1 242 ALAVSAVLQLHSLLasdddihkrnspssmskvslmnqrplkdwlekdshsllsmspestlsplS--VTGSPKMGSFLTALWGLSPKVMVVTEQESNNNGY 339
                ********************************************************99977542..222225688************************* PP

       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                +++er++eal +y alfd+le+++pr+s er+kvE++l+g+ei+n++acega r+erhe+lekW  rle aGF+ vpls++ ++qa +llr+ + + gy+
  PK02707.1 340 TLMERLSEALFFYGALFDCLESTIPRTSIERQKVEKMLFGEEIKNIIACEGAYRTERHEKLEKWILRLELAGFGRVPLSYQGMMQATRLLRQSHlFSGYK 439
                **************************************************************************************************** PP

       GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                ++ee+g+l+++W+drpL+svSaWr
  PK02707.1 440 IKEENGCLIMCWQDRPLFSVSAWR 463
                ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.58123442IPR005202Transcription factor GRAS
PfamPF035147.3E-13649463IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVGEMIKDEG SSSVTSSPLQ FCHLLPSPGL GSPYPWMREP KSEERGLYLI QLLVACANHV  60
AAGSLENANI GLEHISHLTS PDGDSMQRIV AYFAEALADR MLKSWPGLYR ALNSTKIVSV  120
SEEIIVQRYF FELCPFLKLA YVITNQAIFE AMEGEKMIHI IDLNSSQPAQ MIDLLQTLSA  180
RPEGPPHLRI TGVHEQKEVL EQMALRLTEE AEKLDIPFQF TPIVSKLENL DVESLRVKTG  240
EALAVSAVLQ LHSLLASDDD IHKRNSPSSM SKVSLMNQRP LKDWLEKDSH SLLSMSPEST  300
LSPLSVTGSP KMGSFLTALW GLSPKVMVVT EQESNNNGYT LMERLSEALF FYGALFDCLE  360
STIPRTSIER QKVEKMLFGE EIKNIIACEG AYRTERHEKL EKWILRLELA GFGRVPLSYQ  420
GMMQATRLLR QSHLFSGYKI KEENGCLIMC WQDRPLFSVS AWRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-66324651380Protein SCARECROW
5b3h_D5e-66324651380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106407.10.0scarecrow-like protein 3
RefseqXP_024028049.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P5DM640.0A0A2P5DM64_PARAD; GRAS transcription factor
STRINGXP_010106407.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]