PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02666.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 691aa    MW: 76647.1 Da    PI: 5.4298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02666.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-08575623348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
        PK02666.1 575 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 623
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.129568627IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-12570629IPR009057Homeodomain-like
SMARTSM007171.2E-8572625IPR001005SANT/Myb domain
CDDcd116602.34E-19574624No hitNo description
SuperFamilySSF466891.14E-15574633IPR009057Homeodomain-like
PfamPF002494.5E-6575623IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
LRPSYGETLG LSLQLDSTRL ERTLIQFFFT KEKDRATEDY WPNSCSATRL LELSLGPSDI  60
PIPTRKDRVT SMLVCLVACG GFIMETVVGV ENSDEWKFEE SGFFENSTSS LSSPKYIADP  120
VVYKLVRVEC DGRFVPATDD EVMEVEDFLV DDKTEMLVDG GKNAECSSDD GLPSEMLQLD  180
SSEGLPHSGN VKADDEKLTS SLEEVVPSSA LIVDDNCKNL SGSIEELSKP SDEQPDSAPS  240
TSDVCNNQKP DFYKLKGEIC LDNLSIKELH EFFKATFGRE TTVKDKLWLK RRITMGLTNS  300
CDVATTTFTI KDNKLVNKEN EESCKNAEGS VELEVETINN SNNSPTNCDA QMEDHNFVSG  360
KRFNESVEFD FETEDLHAEQ RAAKRVRKPT KRYIEELSEA ESRDYSPKVH SSAKHVGFGS  420
TSPKSCLRPV KSVSFNERIM LTRLDSLGGS GVQVPCVSRI RRSRPRKNIK ALMRFHPSSV  480
GMPTEVVRKA LAVPSSRPDS VLMNRVSESI SASEQIEPLL TSDAENDKQC SAIDRVQTGK  540
TLGLKQTDSS EDTSDDNITT VPTVKGGMRR KHHRAWTLVE VMKLVEGVSK CGAGRWSEIK  600
RLAFASYSYR TSVDLKDKWR NLLKASFAQS PPDDGMNSRK HASVPIPAPI LLRVRQLAEM  660
HSQMPPNLGS NSSLGGVSGR SSVHETRSGY L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460466RRSRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027390.10.0uncharacterized protein LOC21386182 isoform X1
RefseqXP_024027391.10.0uncharacterized protein LOC21386182 isoform X1
TrEMBLA0A2P5BE350.0A0A2P5BE35_PARAD; GAMYB transcription factor
STRINGXP_010105512.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-129TRF-like 6