PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02558.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 158aa MW: 17925.9 Da PI: 8.9951 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.8e-16 | 70 | 156 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k +++s+v+ +l lpkkf++ + +k e+++++ledesg++ + k+ + + l++GW++F a++L egD+vvF+l+ +f +v + PK02558.2 70 VKLMLHSHVSVGFWLGLPKKFCDMYL-PK-EDTMMVLEDESGQVCDAKY--LALK--VGLSAGWRGFSIAHNLVEGDVVVFHLVTPIKF--KVYI 156 68899*****************9994.33.5679***************..4444..44***********************9764444..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-23 | 63 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-19 | 63 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-26 | 67 | 158 | No hit | No description |
PROSITE profile | PS50863 | 11.378 | 69 | 158 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.0E-11 | 69 | 158 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-14 | 70 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
XSKTFSIQSV LNLLEMYYLV TLPQSIIYSN KRKKVNVESL YNDPKAALSP TMQRAYEVQA 60 TLAPEFPSMV KLMLHSHVSV GFWLGLPKKF CDMYLPKEDT MMVLEDESGQ VCDAKYLALK 120 VGLSAGWRGF SIAHNLVEGD VVVFHLVTPI KFKVYIIR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236526.1 | 1e-54 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
Refseq | XP_020425151.1 | 1e-54 | B3 domain-containing protein Os01g0234100 | ||||
Swissprot | Q0JP99 | 4e-40 | Y1341_ORYSJ; B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A2P5CQR4 | 4e-70 | A0A2P5CQR4_TREOI; B3 DNA binding domain containing protein | ||||
STRING | EMJ01456 | 7e-55 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-40 | B3 family protein |
Publications ? help Back to Top | |||
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