PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02524.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28547.1 Da    PI: 6.6009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02524.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-27247651
               HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gkl+e++s
  PK02524.1  2 KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSARGKLFEFCS 47
               79******************************************96 PP
2K-box84.81.9e-28641622100
      K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++++k l+ ++ es +qe+ kLk+++e L+r+qR++lGedLe L l+e+qqLeq+L+ slkkiRs+Kne+++++ ++l+ +e++l een++L++klee
  PK02524.1  64 AEQESKLLSGKDIESTYQEYLKLKEKVEHLRRTQRNILGEDLEHLGLNEIQQLEQKLDMSLKKIRSTKNEHMIDEFSHLRGQEEMLMEENNNLKNKLEE 162
                555556689999************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.796149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-26271IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-23248IPR002100Transcription factor, MADS-box
CDDcd002655.20E-33264No hitNo description
PfamPF003196.1E-23345IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-191126IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-192647IPR002100Transcription factor, MADS-box
PfamPF014868.2E-2476160IPR002487Transcription factor, K-box
PROSITE profilePS5129714.73876166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
XKINRQVTFA KRRNGLLKKA YELSVLCDAE VALIIFSARG KLFEFCSGPS ITKTLERYEK  60
CCYAEQESKL LSGKDIESTY QEYLKLKEKV EHLRRTQRNI LGEDLEHLGL NEIQQLEQKL  120
DMSLKKIRST KNEHMIDEFS HLRGQEEMLM EENNNLKNKL EEICGLFGKQ GDDHGQHNVS  180
YTHQSAEQVQ LNLEPLRHNN TTIALQIGSY DGTANSRMMS GRRENVGAAP SMKNLMAFNS  240
EDHECFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-197816019101Developmental protein SEPALLATA 3
4ox0_B5e-197816019101Developmental protein SEPALLATA 3
4ox0_C5e-197816019101Developmental protein SEPALLATA 3
4ox0_D5e-197816019101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018306.11e-83truncated transcription factor CAULIFLOWER D isoform X2
SwissprotQ8LLR27e-69MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2P5E2H11e-105A0A2P5E2H1_PARAD; MADS-box transcription factor
STRINGXP_009356441.18e-72(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]