PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02496.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HB-other

Protein Properties

Length: 1029aa MW: 115114 Da PI: 8.7472

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02496.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.3	3.4e-05	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+ + g+t +qV+ +F +R + ++ PK02496.1 69 KRPRDLLNPKAVKYMQSVFSVKDAVSKKECREICALYGVTVTQVREFFASQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.956	66	126	IPR001356	Homeobox domain
SMART	SM00389	0.0016	68	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-6	68	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-5	69	137	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.5E-6	225	316	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	8.63E-6	228	314	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence Send to blast
MNALKEDFLE IQIGTSADSL AKSLDSQREL FHSQVDQLQR IVVTQCKLTG ANPLSQEMAA 60 GALSIQIGKR PRDLLNPKAV KYMQSVFSVK DAVSKKECRE ICALYGVTVT QVREFFASQR 120 SRVRRLVRLS REKATKSNSC AELNDGVHAI SDPLLPFQPI PLNTIAPTGI EETPSCSTED 180 DVLPGIDGLD KQFVENIFSW MRKEETYSGQ VKLMEWILQM KNSAVLCWFL SKGGMMIIAS 240 WLSQAAEEEQ TSILLVILNV LCHLPLHKAL PAHMSAILQS VNRLRFYRTS DISNRARVLL 300 SKWSKLLARS EALKKPNGLK SSVDAQQQMM LKQSLSDVMG DDSWQSSIDT PENLLDSSEN 360 VRKFEQSVKL LPASSDDPNK KHILGLSSSQ FRERRKVQLV EQPGNRAAGR SPQTTRAAPL 420 NQERPMSADD IQKAKMRAQY LQSKYVKANS SHENKEAKTE GLNKPSTSQV SNVPTASKVV 480 VRPDIDEHKK PTITPLKVPN TLEASLESKP IIDLKESVWE KCKRVQILWK TPPEVKLDHQ 540 WRVGAGDNSK EAEFQRNRNR REKETFYQTN QEIPLNPKEP WDQEMDYDDS LTLEIPIEQM 600 PEPNGGSNAE ALVSPKHDVD SAITQILDSQ RANGSVPLAA PETSQSGNAS TAEPDLELLA 660 VLLKNPELVF ALTSGQAANL SSEETVKLLD MIKAGNTSSN NGINRKVEEK VEVSLPSPTP 720 STNPGTSGWR PEGVRNPFSR ATLPKGVGES PPPLAMATAN SVLPSHMLAP HNLPVISSYS 780 LSQVTSTVHE KYSTSIGSSL HHQLPLTSSP IVHTHLPQVT GPMYNLHSQD LSSLRHESTT 840 NTKSQASMSN NMYNVEERRH HSFPTPLLPA APSSRPMLQH MHMQQQQQHY QPQHQQQHYQ 900 PQQHYAEPSP SPSPSAPIYS KQIGKLSNVP DSWRPRQNLP SNYNPTVNQN NSNYHRGSYG 960 EEDEFESWSP DNSPSRNSEY SGLGRSFPEP RMDPGRGYWP TDQSRVRSSP GYRDSNRHGN 1020 KRWRDQRRR

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence Send to blast

MNALKEDFLE IQIGTSADSL AKSLDSQREL FHSQVDQLQR IVVTQCKLTG ANPLSQEMAA  60
GALSIQIGKR PRDLLNPKAV KYMQSVFSVK DAVSKKECRE ICALYGVTVT QVREFFASQR  120
SRVRRLVRLS REKATKSNSC AELNDGVHAI SDPLLPFQPI PLNTIAPTGI EETPSCSTED  180
DVLPGIDGLD KQFVENIFSW MRKEETYSGQ VKLMEWILQM KNSAVLCWFL SKGGMMIIAS  240
WLSQAAEEEQ TSILLVILNV LCHLPLHKAL PAHMSAILQS VNRLRFYRTS DISNRARVLL  300
SKWSKLLARS EALKKPNGLK SSVDAQQQMM LKQSLSDVMG DDSWQSSIDT PENLLDSSEN  360
VRKFEQSVKL LPASSDDPNK KHILGLSSSQ FRERRKVQLV EQPGNRAAGR SPQTTRAAPL  420
NQERPMSADD IQKAKMRAQY LQSKYVKANS SHENKEAKTE GLNKPSTSQV SNVPTASKVV  480
VRPDIDEHKK PTITPLKVPN TLEASLESKP IIDLKESVWE KCKRVQILWK TPPEVKLDHQ  540
WRVGAGDNSK EAEFQRNRNR REKETFYQTN QEIPLNPKEP WDQEMDYDDS LTLEIPIEQM  600
PEPNGGSNAE ALVSPKHDVD SAITQILDSQ RANGSVPLAA PETSQSGNAS TAEPDLELLA  660
VLLKNPELVF ALTSGQAANL SSEETVKLLD MIKAGNTSSN NGINRKVEEK VEVSLPSPTP  720
STNPGTSGWR PEGVRNPFSR ATLPKGVGES PPPLAMATAN SVLPSHMLAP HNLPVISSYS  780
LSQVTSTVHE KYSTSIGSSL HHQLPLTSSP IVHTHLPQVT GPMYNLHSQD LSSLRHESTT  840
NTKSQASMSN NMYNVEERRH HSFPTPLLPA APSSRPMLQH MHMQQQQQHY QPQHQQQHYQ  900
PQQHYAEPSP SPSPSAPIYS KQIGKLSNVP DSWRPRQNLP SNYNPTVNQN NSNYHRGSYG  960
EEDEFESWSP DNSPSRNSEY SGLGRSFPEP RMDPGRGYWP TDQSRVRSSP GYRDSNRHGN  1020
KRWRDQRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017708.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2P5FFR5	0.0	A0A2P5FFR5_TREOI; Octamer-binding transcription factor
STRING	EOX94988	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]