PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02473.3
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 70aa    MW: 7568.12 Da    PI: 4.1651
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02473.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind28.44.4e-093669235
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH CS
  HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeee 35
                  Fl+k++e++ed++++ ++sws   nsfvv+d+++
     PK02473.3 36 FLTKTFEMVEDPSTDAIVSWSIARNSFVVWDSHQ 69
                  9********************888******9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-102969IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-73268IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-63669IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
FVGTGSSSSS SSNNQSPPPI MVQPMEGLHD VGPPPFLTKT FEMVEDPSTD AIVSWSIARN  60
SFVVWDSHQX
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026449317.14e-25heat stress transcription factor A-7a-like
SwissprotP411521e-22HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2P5FE006e-24A0A2P5FE00_TREOI; Heat shock transcription factor
STRINGEMJ245103e-23(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-23heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]