PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02378.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LSD
Protein Properties Length: 172aa    MW: 18218.3 Da    PI: 8.4417
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02378.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.26.4e-14731125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr++L YPrGA++V+Ca+C+t+
  PK02378.1  7 CSGCRNMLLYPRGATNVCCAICNTI 31
               ***********************97 PP
2zf-LSD149.75.9e-164670125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggCrtlL+Y+rGA+sVRC++C+tV
  PK02378.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70
               ************************9 PP
3zf-LSD148.81.1e-1584108125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Crt+L+YP+GApsV+Ca+C+ V
  PK02378.1  84 CGNCRTTLMYPFGAPSVKCAVCQYV 108
                ***********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.0E-14434IPR005735Zinc finger, LSD1-type
PfamPF069435.8E-12731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-174372IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.9E-1381111IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-1484108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQSQLVCSGC RNMLLYPRGA TNVCCAICNT ITSVPPPGME MAQLICGGCR TLLMYTRGAT  60
SVRCSCCHTV NLAPGSNQMA HVNCGNCRTT LMYPFGAPSV KCAVCQYVTN VGMGNMRVPI  120
PVHRPNSGTM PSTSAPMPHS QSQTVVVENP MSVDESGKLV SNVVVGVTTE KK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022803.11e-111protein LSD1
RefseqXP_024022804.11e-111protein LSD1
RefseqXP_024022805.11e-111protein LSD1
SwissprotQ2QMB32e-75LOL2_ORYSJ; Protein LOL2
TrEMBLA0A2P5FZT01e-112A0A2P5FZT0_TREOI; Zinc finger, LSD1-type
STRINGXP_008225697.11e-105(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-75LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]