PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | HB-other | ||||||||
Protein Properties | Length: 1118aa MW: 126432 Da PI: 6.9885 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37 | 5.9e-12 | 7 | 56 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle L +++ +n+yp++ ++e A+ gLt +q++ WF +R kek+ PK02373.1 7 TPVQLEGLDTMYLENKYPTQMDIENYAATAGLTSKQIQCWFVEKRRKEKR 56 899**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.8E-8 | 1 | 61 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.14E-10 | 5 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 6 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.5E-9 | 6 | 56 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-11 | 6 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.665 | 7 | 57 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 11.992 | 346 | 405 | IPR018501 | DDT domain |
SMART | SM00571 | 5.3E-8 | 346 | 405 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.7E-8 | 349 | 402 | IPR018501 | DDT domain |
Pfam | PF15612 | 4.3E-6 | 627 | 668 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.5E-11 | 759 | 832 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1118 aa Download sequence Send to blast |
MEIKRKTPVQ LEGLDTMYLE NKYPTQMDIE NYAATAGLTS KQIQCWFVEK RRKEKRENVI 60 TISSNSTSKE KHAAREVVAG SSSSKCQKAS TTKNIISQDL FTPGYILRRV FRKDGPPLGV 120 EFDSPSSGDL LHCKDSKICY SSCKESQRAA KRTKVSKHAF INTICSGKNA PSKKHGMGKG 180 LMTAWRVINP HAGDYPTSID FTNDETGPSI SKSVARNPHI QARKPKNQKI LTIQGRLRDK 240 LQEKKKKKHF VKRREVKSYK DANQKPTGKT KCELALEGGH SLDNLNQISM LVDDEELESR 300 ELQAVLNRPW CSGHSTTGHQ DLLAKFPPNS VKMKQPFSMQ PWDSSPEIVK KFFKVFHFLY 360 TYSLVVDVCP FTLDEFAQAF HDKDSLLLGK IHVALLKHLL SDIELELNNE SLRHQSKSCN 420 YLALLHMVEN QDFSLEFWGR SLNPLTWTEI LRQILVASGF GAKQSSIQRE TFDKEVHLMV 480 KSGLHPGTLK GVLFQILLEQ GNNGLKVSDM AKSFRIVDLK LATTTEELEC LICSMLSSDI 540 TLFEKISPST YRLRINSILK KVEELQSDTE DSGAVDDGSS ESDAYSSDED SRCDAEDSTL 600 IEVMKLNKPK NQNGLSNNYT EIDESHPGES WLLGLMESEY SDLSTEEKLN VMVALIDLLR 660 AGSSIRMEEP PETIAECVPS TYHSTSGAKI KRSSAKHQNL LNTSWGHLGQ LQGIKEAYAY 720 WNCHAIDSSS SISKLCERPS YKENVAKHTE VWAGLHPMQS VFLGSDRRYN RYWLFLGPCN 780 ANDPGHRRIY FESFKDGHWE VIDTKEALCA LLEVLDDRGK REALLIESLE KRQACLCETM 840 SSRMVNSNGS GHLTHFDQSD LTIIREDSYS PLSDVDNNLT LTDVMCDSLP SSGAIVIEVG 900 NKGEEQKQKW IRLQAFDSWT WSEFYLCLNA VKHGKRSYFD SLTRCECCHD LFWRDEKHCR 960 VCHTTFEVDF DQEERYAIHL ATCRDDEVTD VFPKVLSSQL QSLKAAIYAI ESVMPEDALI 1020 GAWTKSAHKL WVKRLRRTSS LQELMQVLTD FIGAINESWL SQCNVLPGSY DGEELIACFT 1080 TLPQTTSAVA LWLSKLDALV SPYLERGHSG KIGRRICQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021819888.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
TrEMBL | A0A2P5DDC1 | 0.0 | A0A2P5DDC1_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_008228086.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6118 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |