PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02339.6

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 289aa MW: 33485.1 Da PI: 8.5115

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02339.6	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.9	1.2e-15	4	72	19	87
-HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 p +fa+++ +k s++++l+ + gr+W+v ++y +++s+ + GWkeFv++n+Lk+gD++ F l ++ PK02339.6 4 PFHFARTYLSK---SQDVILKVQGGRTWSVMYSYkqyEGSSRYSRFCCGWKEFVQDNDLKVGDVCAFVLRKN 72 77899999433...568*************996644555557888******************98664 PP
2	B3	34.5	3.7e-11	215	288	2	80
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+v+++s + ++rl++p +fa+++ +gk ++t++l + ++ v+l ++ ++ +++GW Fv++n L++gD++ PK02339.6 215 FQVTLRSTHVHRRRLYIPMSFARDYlEGK---TQTIILWVGEECQY-VNL--IVNGAEHKFSSGWCAFVRDNSLQVGDVC 288 45555777778889*********6444...34788777555554.666..45666788*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.902	1	86	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0048	1	81	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-17	2	86	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.40E-19	3	83	No hit	No description
SuperFamily	SSF101936	6.47E-17	3	80	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.8E-13	3	72	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.2E-17	208	288	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.47E-17	210	288	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.77E-15	213	288	No hit	No description
PROSITE profile	PS50863	10.221	214	289	IPR003340	B3 DNA binding domain
SMART	SM01019	0.25	214	289	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-10	215	288	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
XNVPFHFART YLSKSQDVIL KVQGGRTWSV MYSYKQYEGS SRYSRFCCGW KEFVQDNDLK 60 VGDVCAFVLR KNIGVILFKV VIFYENGAAN SPMLPGKQEL YYLLYNNDNY GNXYNLDHFP 120 SHPSNIYWAN NVCNNIGEEK IREEQQLYTA PNMSRSATLS GTVRNLCVKV ESFNNYDEDK 180 TSIISYNLNA RREQQNIKVE RPLGPSQFVS KNPYFQVTLR STHVHRRRLY IPMSFARDYL 240 EGKTQTIILW VGEECQYVNL IVNGAEHKFS SGWCAFVRDN SLQVGDVCX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14300	4	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	7e-13	related to vernalization1 1