PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02339.5
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 242aa    MW: 28083.9 Da    PI: 9.6421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02339.5genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18894187
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
               ff  + ps v+++  l +p +fa+++ +k   s++++l+ + gr+W+v ++y   +++s+   +  GWkeFv++n+Lk+gD++ F l ++
  PK02339.5  8 FFVPMQPSVVGAKFHLNVPFHFARTYLSK---SQDVILKVQGGRTWSVMYSYkqyEGSSRYSRFCCGWKEFVQDNDLKVGDVCAFVLRKN 94
               889999********************544...568***************996644555557888********************98664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-242108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-233102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-256105No hitNo description
PfamPF023623.9E-16894IPR003340B3 DNA binding domain
PROSITE profilePS5086313.7338108IPR003340B3 DNA binding domain
SMARTSM010194.0E-138103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-6189231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-6191232IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
FKSKDPFFFV PMQPSVVGAK FHLNVPFHFA RTYLSKSQDV ILKVQGGRTW SVMYSYKQYE  60
GSSRYSRFCC GWKEFVQDND LKVGDVCAFV LRKNIGVILF KVVIFYENGA ANSPMLPGEE  120
KIREEQQLYT APNMSRSATL SGTVRNLCVK VESFNNYDED KTSIISYNLN ARREQQNIKV  180
ERPLGPSQFV SKNPYFQVTL RSTHVHRRRL YIPMSFARDY LEGKTQTIIL WVGEECQYVN  240
LX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-09B3 family protein