PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02339.4
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 241aa    MW: 27370.5 Da    PI: 8.7298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02339.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.4e-1417104799
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +   ++   l +pk f  ++ ++   s ++ l+ + g +Wev l  +k+s++ +++++GW++F++   L  g  +vF+++g+s f   v++f+k
  PK02339.4  17 QTPDNTYTKLQIPKAFWVKYCSS--LSSQVFLKLPCGSTWEVGL--TKSSDGnVWIEEGWNKFAQHCSLSRGNLLVFRYEGNSLF--DVTIFDK 104
                3444444569*******999544..5558***************..8888888****************************9999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-203105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-203105IPR015300DNA-binding pseudobarrel domain
CDDcd100178.09E-148103No hitNo description
SMARTSM010191.4E-410105IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53511105IPR003340B3 DNA binding domain
PfamPF023626.5E-1118104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVFSPTAPHF FKIILQQTPD NTYTKLQIPK AFWVKYCSSL SSQVFLKLPC GSTWEVGLTK  60
SSDGNVWIEE GWNKFAQHCS LSRGNLLVFR YEGNSLFDVT IFDKDTMEID YPSNPSHFEK  120
HSVDDTKDDI SIKVLDKSPL PCSASSHKKM KTSPCDKSEV KFDLSDKVCG ESPVPRGMEP  180
EKYTTKQRLT GKVKAKALMR AEGFKSKDPF FFVPMQPSVV GAKFHLVMNK FLSCCDFQIR  240
H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029280.16e-47uncharacterized protein LOC21397262
TrEMBLA0A2P5BZ382e-77A0A2P5BZ38_PARAD; B3 DNA binding domain containing protein
STRINGXP_010113419.12e-51(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-24B3 family protein