PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02339.3

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 298aa MW: 33486.6 Da PI: 10.1074

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02339.3	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	7e-19	12	88	13	86
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + ++ +p +fa+++ g++ ++++++l+ ++gr+W+vk+ + r+ s+++++++GWk Fv++n+Lk+gD++ F +++ PK02339.3 12 KYCMGMPSPFAKKYlFGISSTPQDVILTVKDGRTWSVKYYVrpRGVSSKTTIEGGWKAFVQDNDLKVGDVCAFVMTK 88 345999*******66667899************5577777778**********************8654 PP
2	B3	58	1.7e-18	221	298	12	82
HT..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 12 ks..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvF 82 ++ +++p fa+++ +++ ++++++l+ +gr+W vk+++ kks+++ +++GWk Fv++n+Lk+gD++ F PK02339.3 221 SKskYSMIIPSFFAKKYlLSISSGPQDVILKVHDGRTWPVKYTFyfrpHKKSSTFRIERGWKAFVQDNDLKVGDVCAF 298 4433569*********55557889************999998888889********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.5E-18	2	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.51E-20	2	100	No hit	No description
SuperFamily	SSF101936	3.53E-18	2	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	4.9E-9	6	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-16	11	88	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.449	17	103	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.5E-21	198	298	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-20	205	298	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.21E-22	208	298	No hit	No description
SMART	SM01019	0.0031	210	298	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.62	212	298	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-16	223	298	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
XMQPSFVGSK SKYCMGMPSP FAKKYLFGIS STPQDVILTV KDGRTWSVKY YVRPRGVSSK 60 TTIEGGWKAF VQDNDLKVGD VCAFVMTKNI GIILFEVIIF HNNGVANFPM AMLSIPAANK 120 RSSTTPSKPK ITPCAKIEPS FTSDYDKASM ILEDLIAKNI IAEPAVNESD KVCGESPVPK 180 KFIRNQELSR KEKAEAFQRA KDFKSEDPFF IVPMQPSFVG SKSKYSMIIP SFFAKKYLLS 240 ISSGPQDVIL KVHDGRTWPV KYTFYFRPHK KSSTFRIERG WKAFVQDNDL KVGDVCAF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14300	4	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-14	B3 family protein