PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02339.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 729aa    MW: 81582 Da    PI: 8.9418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02339.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-12361161499
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  l +pk f  ++ ++   s ++ l+ + g +Wev l  +k+s++ +++++GW++F++   L  g  +vF+++g+s f   v++f+k
  PK02339.2  36 TKLQIPKAFWVKYCSS--LSSQVFLKLPCGSTWEVGL--TKSSDGnVWIEEGWNKFAQHCSLSRGNLLVFRYEGNSLF--DVTIFDK 116
                4589*****9999544..5558***************..8888888****************************9999..9999987 PP
2B354.12.8e-17223308186
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                ff  + ps v+++  l +p +fa+++ +k   s++++l+ ++gr W+vk+     +++s+   ++ GWk Fv++n+L++gD++ F l++
  PK02339.2 223 FFVPMQPSVVGAKFHLNVPFHFARTYLSK---SQDVILKVQDGRNWSVKYFSrqyEGSSRYSRFECGWKAFVQDNELEVGDVCAFVLTK 308
                889999********************544...568***************5544366666699**********************9866 PP
3B358.31.4e-184425201386
                T..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3  13 s..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                +   ++ +p +fa+++  g++ ++++++l+ ++gr+W+vk+ +  r+ s+++++++GWk Fv++n+Lk+gD++ F l +
  PK02339.2 442 KskYCMGMPSPFAKKYlFGISSTPQDVILTVKDGRTWSVKYYVrpRGVSSKTTIEGGWKAFVQDNDLKVGDVCAFVLRK 520
                4334599**********66667899****************5577777778************************9754 PP
4B340.35.6e-136357211499
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + l++p   a+   +kk    +++    + + W v+l+++k s++    y +++GW  F+++n L++ D+++F+++++++ e +v++fr+
  PK02339.2 635 QKLYIPMAIANPWFEKKS---QIVTLWVDEEHWHVNLTINKASSSsgleYRFSAGWAAFARDNSLNQSDVCIFEMIKKNKPEVKVTIFRQ 721
                567788777755554433...3666667899******998887777999***************************9999999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1917117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1718117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.53423117IPR003340B3 DNA binding domain
SMARTSM010190.003124117IPR003340B3 DNA binding domain
PfamPF023621.8E-935116IPR003340B3 DNA binding domain
CDDcd100173.56E-1137115No hitNo description
Gene3DG3DSA:2.40.330.106.1E-22216323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-20218320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-21221320No hitNo description
SMARTSM010195.6E-13223323IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437223323IPR003340B3 DNA binding domain
PfamPF023626.3E-15223309IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-20422529IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-19425522IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-22428533No hitNo description
SMARTSM010192.5E-10438530IPR003340B3 DNA binding domain
PfamPF023629.9E-16443520IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266449530IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19615722IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-16616722IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-14619720No hitNo description
SMARTSM010198.3E-5621722IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025622722IPR003340B3 DNA binding domain
PfamPF023621.9E-10631721IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MASSSSHTHI AEGHTEIPPT AHHFFNTILE QTPGNTKLQI PKAFWVKYCS SLSSQVFLKL  60
PCGSTWEVGL TKSSDGNVWI EEGWNKFAQH CSLSRGNLLV FRYEGNSLFD VTIFDKDTME  120
IDYPSNPSHF EKHSVDDTKD DISIKVLDKS PLPCSASSHK KMKTSPCDKS EVKFDLSDKV  180
CGESPVPRGM EPEKYTTKQR LTGKVKAKAL MRAEGFKSKD PFFFVPMQPS VVGAKFHLNV  240
PFHFARTYLS KSQDVILKVQ DGRNWSVKYF SRQYEGSSRY SRFECGWKAF VQDNELEVGD  300
VCAFVLTKNI GIILFEVIIF HNSGVANSPM AMLSIPAANK RSSTTPSKPK ITPCAKIEPS  360
FTSDYDKASM ILEDLIAKNI IAEPAVNESD KVCGESPVPK KFIRNQELSR KEKAEAFQRA  420
KDFKSEDPFF IVPMQPSFVG SKSKYCMGMP SPFAKKYLFG ISSTPQDVIL TVKDGRTWSV  480
KYYVRPRGVS SKTTIEGGWK AFVQDNDLKV GDVCAFVLRK SIGVILFEVS ILPIPAANKR  540
SSTPCVEIEP SSTSNNYDIA SMIPHDIIAN KEVIEPSENF TKLVSKENTG SQGTNYKRPS  600
SSGLSIASEA ASKFFSNNPY FQVNLRSTHV RGHGQKLYIP MAIANPWFEK KSQIVTLWVD  660
EEHWHVNLTI NKASSSSGLE YRFSAGWAAF ARDNSLNQSD VCIFEMIKKN KPEVKVTIFR  720
QSESGMAQE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-31B3 family protein