PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02339.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 709aa    MW: 80340.2 Da    PI: 9.3158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02339.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.9e-1317104799
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +   ++   l +pk f  ++ ++   s ++ l+ + g +Wev l  +k+s++ +++++GW++F++   L  g  +vF+++g+s f   v++f+k
  PK02339.1  17 QTPDNTYTKLQIPKAFWVKYCSS--LSSQVFLKLPCGSTWEVGL--TKSSDGnVWIEEGWNKFAQHCSLSRGNLLVFRYEGNSLF--DVTIFDK 104
                3344444569*******999544..5558***************..8888888****************************9999..9999987 PP
2B354.12.7e-17211296186
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                ff  + ps v+++  l +p +fa+++ +k   s++++l+ ++gr W+vk+     +++s+   ++ GWk Fv++n+L++gD++ F l++
  PK02339.1 211 FFVPMQPSVVGAKFHLNVPFHFARTYLSK---SQDVILKVQDGRNWSVKYFSrqyEGSSRYSRFECGWKAFVQDNELEVGDVCAFVLTK 296
                889999********************544...568***************5544366666699**********************9866 PP
3B358.89.8e-194305091387
                T..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3  13 s..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                +   ++ +p +fa+++  g++ ++++++l+ ++gr+W+vk+ +  r+ s+++++++GWk Fv++n+Lk+gD++ F l ++
  PK02339.1 430 KskYCMGMPSPFAKKYlFGISSTPQDVILTVKDGRTWSVKYYVrpRGVSSKTTIEGGWKAFVQDNDLKVGDVCAFVLRKN 509
                4334599**********66667899****************5577777778************************98654 PP
4B350.24.6e-16611703299
                EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+v+++s +  ++rl++p +fa+++ +gk +  +t++l   +  +  v+l    ++ ++ +++GW  Fv++n L++gD+++F+l +  ++e++v++fr+
  PK02339.1 611 FQVTLRSTHVHRRRLYIPMSFARDYlEGK-T--QTIILWVGEECR-YVNL--IVNGAEHKFSSGWCAFVRDNSLQVGDVCIFELLKGYQAEMKVHIFRQ 703
                45555777778889***********6444.3..367766644443.4556..45666788***********************999999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-203105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-193105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-138103No hitNo description
SMARTSM010191.4E-410105IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53511105IPR003340B3 DNA binding domain
PfamPF023624.3E-1018104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-22204311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20206308IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-21209308No hitNo description
PfamPF023626.1E-15211297IPR003340B3 DNA binding domain
SMARTSM010195.6E-13211311IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437211311IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-21410523IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20412521IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-22416520No hitNo description
SMARTSM010191.5E-10426518IPR003340B3 DNA binding domain
PfamPF023626.5E-16431509IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548437523IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-22604704IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-22606704IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-18609702No hitNo description
SMARTSM010192.8E-11610704IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942610704IPR003340B3 DNA binding domain
PfamPF023622.8E-15611703IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MVFSPTAPHF FKIILQQTPD NTYTKLQIPK AFWVKYCSSL SSQVFLKLPC GSTWEVGLTK  60
SSDGNVWIEE GWNKFAQHCS LSRGNLLVFR YEGNSLFDVT IFDKDTMEID YPSNPSHFEK  120
HSVDDTKDDI SIKVLDKSPL PCSASSHKKM KTSPCDKSEV KFDLSDKVCG ESPVPRGMEP  180
EKYTTKQRLT GKVKAKALMR AEGFKSKDPF FFVPMQPSVV GAKFHLNVPF HFARTYLSKS  240
QDVILKVQDG RNWSVKYFSR QYEGSSRYSR FECGWKAFVQ DNELEVGDVC AFVLTKNIGI  300
ILFEVIIFHN SGVANSPMAM LSIPAANKRS STTPSKPKIT PCAKIEPSFT SDYDKASMIL  360
EDLIAKNIIA EPAVNESDKV CGESPVPKKF IRNQELSRKE KAEAFQRAKD FKSEDPFFIV  420
PMQPSFVGSK SKYCMGMPSP FAKKYLFGIS STPQDVILTV KDGRTWSVKY YVRPRGVSSK  480
TTIEGGWKAF VQDNDLKVGD VCAFVLRKNI GVILFKVVIF YENGAANSPM LPGEEKIREE  540
QQLYTAPNMS RSATLSGTVR NLCVKVESFN NYDEDKTSII SYNLNARREQ QNIKVERPLG  600
PSQFVSKNPY FQVTLRSTHV HRRRLYIPMS FARDYLEGKT QTIILWVGEE CRYVNLIVNG  660
AEHKFSSGWC AFVRDNSLQV GDVCIFELLK GYQAEMKVHI FRQSSLAQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1359670233141B3 domain-containing transcription factor VRN1
4i1k_B2e-1359670233141B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-31B3 family protein