PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK02334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 155aa MW: 17023.4 Da PI: 9.1875 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.5e-05 | 35 | 74 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++ L++l+ + +K + a++L +A+eYI+ L PK02334.1 35 KERKENLGAKIVALQQLVSPY-----GKTDTASVLLEAMEYIQFL 74 566777778889999999998.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-9 | 24 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.045 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.004 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-11 | 31 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-4 | 35 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MTEHKRSPCY VDQSSFSSSL VSSKRQKPDL SISTKERKEN LGAKIVALQQ LVSPYGKTDT 60 ASVLLEAMEY IQFLHEQVKV LSAPYLESTP PTKIQEMEAF KLRSRGLCLV PVSCTLGVAR 120 SNGADIWAPI KTTSPKFDTS SSSPSSSSIS HSQFH |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010101389.2 | 1e-82 | transcription factor bHLH153 isoform X1 | ||||
Swissprot | Q7XJU2 | 2e-58 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2P5DWM3 | 6e-86 | A0A2P5DWM3_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
STRING | XP_010101389.1 | 2e-82 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 9e-57 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|