PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02322.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28146.1 Da PI: 10.0169 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PK02322.1 66 FICEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PK02322.1 142 WKCDKCSKKYAVQSDWKAHSKIC 164 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.8E-7 | 65 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-6 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.845 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.6E-5 | 66 | 88 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.8E-7 | 137 | 162 | No hit | No description |
SMART | SM00355 | 150 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MATELENSST VSGEASVSSS GNHTVVPPPA PPKSTAKKKR NLPGMPDPDA EVIALSPKTL 60 MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EASCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAEESAKT HTPAPAQAPA PAQAPAQAAK APQKKDQTQL AENMNMESES 240 KAQLVKSSPP PAPAPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 138 | 199 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 138 | 199 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888880.1 | 1e-137 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-132 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2P5FXR5 | 1e-144 | A0A2P5FXR5_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | evm.model.supercontig_158.1 | 1e-137 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-108 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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