PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01852.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 305aa MW: 34834.1 Da PI: 4.6355

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01852.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	213.7	9.7e-66	21	297	76	350
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg..........ppslRiTgvgspesgskeeleetger 164 +++ +++ ++ P++++ h+ a qaI e++++ +++H+iD++i G+QW L++aLa+R+++ l+iT++g pe ++ ++eet++r PK01852.1 21 TSILSVT-CFQRLPFPQVLHFPAVQAIIESLDEFdDKLHVIDLEIRSGVQWTLLMKALAERNDNnninnqdrplFQLLKITAIGTPE--NQVKIEETQNR 117 3344444.44567******************9899*********************4445666665444589***88..99***** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 L+++Ae+l+vpf+f++l+ ++l+d++ +++++++E+laV +l l +l +++sle+ +++++k+l+P v+vv+e e+++n++sF++rf+eal +y PK01852.1 118 LTNLAESLNVPFSFKILILTELDDINEGMIETEEDEVLAVFTSLLLRMMLYKPLSLEK----LMRVIKTLKPSVMVVIETEVNLNAPSFANRFIEALFFY 213 ******************************************************....********************************** PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 a+fd++e+ + +e+e ++++E++ lg i n+v++e+ er+ r + + Wr+ +e++ + + +ls++ qa+l+ +k++ g + PK01852.1 214 GAFFDCFETCFKEEEELKTTMEEV-LGMGIDNIVSKENGERVIRSVRIGVWRAFFERFRMVESKLSDSSLYQASLVAKKFG-YGSS 297 *******************9.**************************************************9998.3333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.526	1	302	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-63	21	297	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MTSTTNTTNN DKDQLSRGLG TSILSVTCFQ RLPFPQVLHF PAVQAIIESL DEFDDKLHVI 60 DLEIRSGVQW TLLMKALAER NDNNNINNQD RPLFQLLKIT AIGTPENQVK IEETQNRLTN 120 LAESLNVPFS FKILILTELD DINEGMIETE EDEVLAVFTS LLLRMMLYKP LSLEKLMRVI 180 KTLKPSVMVV IETEVNLNAP SFANRFIEAL FFYGAFFDCF ETCFKEEEEL KTTMEEVLGM 240 GIDNIVSKEN GERVIRSVRI GVWRAFFERF RMVESKLSDS SLYQASLVAK KFGYGSSLTM 300 ERNGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-22	28	288	79	339	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019575.1	1e-108	DELLA protein RGL1
TrEMBL	A0A2P5DGI4	1e-141	A0A2P5DGI4_TREOI; GRAS transcription factor
STRING	XP_010087232.1	1e-107	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	5e-39	RGA-like protein 3