PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01844.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 30076.3 Da    PI: 10.0798
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01844.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.4e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+ rqvtfskRr g+lKKA+E+SvLCda va+i+fs++gkl+ +ss
  PK01844.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAHVALIVFSTKGKLFNFSS 59
               79***********************************************96 PP
2K-box86.84.5e-29891809100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 e++++++++ e+ kL +++e Lq+++R+ +GedL  Ls++eLq++eqq++ +lk++R++Kn++++e +++lqkk k++q++n+ ++++++e
  PK01844.1  89 SESQDSSKWTFEFPKLMSRVEILQKNLRNCMGEDLALLSMRELQNIEQQIDVGLKRVRTRKNQIMHETLSDLQKKAKAIQDRNNWITNQIKE 180
                5778899******************************************************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-32280IPR002100Transcription factor, MADS-box
CDDcd002657.32E-41274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2390178IPR002487Transcription factor, K-box
PROSITE profilePS5129712.8594197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AHVALIVFST KGKLFNFSSS  60
SSMEEILERY ESYSTNAQKH LQAAPTTLSE SQDSSKWTFE FPKLMSRVEI LQKNLRNCMG  120
EDLALLSMRE LQNIEQQIDV GLKRVRTRKN QIMHETLSDL QKKAKAIQDR NNWITNQIKE  180
DGKILVESRN LDQQANNSPN SSTLLLLAPP PRPSSLPSLT IGETFQERVL TEENNERQSH  240
EQPSSNNTTP MPPWMLPQMK FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19174173MEF2 CHIMERA
6byy_B1e-19174173MEF2 CHIMERA
6byy_C1e-19174173MEF2 CHIMERA
6byy_D1e-19174173MEF2 CHIMERA
6bz1_A2e-19174173MEF2 CHIMERA
6bz1_B2e-19174173MEF2 CHIMERA
6bz1_C2e-19174173MEF2 CHIMERA
6bz1_D2e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023273.11e-103truncated transcription factor CAULIFLOWER A isoform X1
SwissprotD7SMN67e-83FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2P5E9881e-115A0A2P5E988_TREOI; MADS-box transcription factor
STRINGXP_004304203.11e-90(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]