PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK01823.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 54aa MW: 5943.47 Da PI: 5.5851 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.8 | 1e-12 | 29 | 53 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kpr+rWtpeLHerFveav++L G+e PK01823.3 29 KPRMRWTPELHERFVEAVNKLDGAE 53 79*******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-5 | 27 | 51 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 28 | 51 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-8 | 29 | 52 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 54 aa Download sequence Send to blast |
MSDDGFRSTA PPVDALLNVP SPGPAALHKP RMRWTPELHE RFVEAVNKLD GAEX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183218.2 | 7e-17 | myb family transcription factor PHL6-like isoform X2 | ||||
Refseq | XP_028953632.1 | 7e-17 | myb family transcription factor PHL6-like isoform X1 | ||||
Refseq | XP_028953633.1 | 4e-17 | myb family transcription factor PHL6-like isoform X3 | ||||
TrEMBL | A0A2P5FLT0 | 7e-18 | A0A2P5FLT0_TREOI; Octamer-binding transcription factor | ||||
STRING | Lus10035705 | 1e-16 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13469 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-11 | G2-like family protein |