PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01823.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 471aa    MW: 51581.4 Da    PI: 6.2576
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01823.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.43.2e-33253307155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr+rWtpeLHerFveav++L G+ekAtPk +l++mkv+gLt++hvkSHLQkYRl
  PK01823.1 253 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKVMKVEGLTIYHVKSHLQKYRL 307
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.979250310IPR017930Myb domain
SuperFamilySSF466897.35E-18251307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-31252308IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25253308IPR006447Myb domain, plants
PfamPF002496.1E-9255306IPR001005SANT/Myb domain
PfamPF143796.8E-23344391IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSHQSIVSMT QGEASKEVSS SYCIPLCPGQ SLLGGECSSS LSSPFIRTQS LSSPIHPPKY  60
SFGSSSSSTP MSPGSHVEPT KSSFSRSSVF CTSLYQSSMS SETQRHLGNL PFLPPPSCNQ  120
SVSAVASTSS PLLFSGDLSN QFDEDQSDSA EALMKDFLNL SGDASHHSHS NFHGLSCASD  180
SVAFTDNLEL QYLTDELDFG ISDHAETPRV DEIYETSPKP SIGLMSDDGF RSTAPPVDAL  240
LNVPSPGPAA LHKPRMRWTP ELHERFVEAV NKLDGAEKAT PKGVLKVMKV EGLTIYHVKS  300
HLQKYRLAKY IPEKKEEKKD SAGLEEKKTP LSSFEIDSKR KGSIQITEAL RMQMEVQKQL  360
HEQLEVQRAL QLRIEEHARY LQKILEEQQK AGSALVSSQA LSSLSSPSCE ESHQQPSPCA  420
LVSSSQQLDS KTHSASSSPP FNKHKSTQSS HDCDPKQSNK RIRLHDDDDD C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-28253310259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021118.10.0myb family transcription factor PHL6
RefseqXP_024021119.10.0myb family transcription factor PHL6
SwissprotQ949U21e-121PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A2P5FLT00.0A0A2P5FLT0_TREOI; Octamer-binding transcription factor
STRINGXP_010095978.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-115G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]