PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01662.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SRS
Protein Properties Length: 226aa    MW: 25729.8 Da    PI: 8.2545
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01662.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702156.61.7e-48216915153
     DUF702  15 akkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstklssaeskkeletss... 104
                akk+C+++RCRtCCks+gf+C+th+kstWvp ++rr+++++++  + ++ +++         +++kr      +++  +ss+++++++++   ++++   
  PK01662.1   2 AKKECVYMRCRTCCKSKGFQCQTHIKSTWVPLYRRRHHHHHHHHHNLNQYQENiqdheyyYFNTTKR----LRSSHLITSSSTINNNNNNILNPITTtpi 97 
                9************************************999888888887777744433331122222....22333333344444444444444444566 PP

     DUF702 105 .................lPeevsseavfrcvrvss......vddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 +P+ev+++a f+ vrvss      +d++++++aYqtav+igGhvfkGiLydqG +
  PK01662.1  98 pssstpgfgkeeelaqnFPAEVKTTATFQVVRVSSrvnvngIDQNHDQYAYQTAVTIGGHVFKGILYDQGFQ 169
                67888889999999999*************9987554444499***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016231.7E-21236IPR006510Zinc finger, lateral root primordium type 1
PfamPF051422.1E-472169IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.0E-19115167IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
XAKKECVYMR CRTCCKSKGF QCQTHIKSTW VPLYRRRHHH HHHHHHNLNQ YQENIQDHEY  60
YYFNTTKRLR SSHLITSSST INNNNNNILN PITTTPIPSS STPGFGKEEE LAQNFPAEVK  120
TTATFQVVRV SSRVNVNGID QNHDQYAYQT AVTIGGHVFK GILYDQGFQQ IINNNSNKIV  180
AGAGDRTTTA GEGFDHHQQQ QLPIDYFVSD NKSHDDVDDG GGRGLX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458269.15e-46PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X1
TrEMBLA0A2P5DVV31e-57A0A2P5DVV3_TREOI; Uncharacterized protein
STRINGXP_004292419.12e-45(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-27SHI-related sequence 5