PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK01612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 824aa MW: 93943.9 Da PI: 6.0737 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359 | 6.9e-110 | 336 | 705 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA+av+s d++ a++lL+++++++sp+gd qRla yf++AL+ rl++ ++ y+ l ++ +s + l+a++++ ++P+ ++s++ aN++ PK01612.1 336 TSLLTQCAQAVASYDQRTATQLLKQIKDHSSPHGDESQRLAYYFANALEVRLSG-GTPSYNHLGSNGAS---AYDLLKAYQVYITACPFKRMSQIYANRT 431 579***************************************************.66667777666666...89************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 Il+ e+++r+HiiDf++ +G+QWp+L+q L++Rp+gpp+lR Tg++ p++g +e++ +tg+rLa+++e+++vpfe n+ +a+++e++++e+L+++++ PK01612.1 432 ILKLSEKANRLHIIDFGVLYGFQWPCLIQRLSERPGGPPMLRFTGIEFPQTGfrPSERVIQTGRRLANYCERFKVPFECNM-IAQKWETVKIEDLKLDRN 530 ***************************************************9*****************************.7***************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E ++Vn+ ++++l+de+v + +rdevL+l+++++P+++++ + +hn++ Fl+rf eal ++salfd++ea+lpre+++r + E+e++gr+++nvva PK01612.1 531 ELTVVNCLDRMKNLPDETVIEDCPRDEVLRLIRRINPTLFIHGVLNGNHNAPFFLTRFREALFHFSALFDMFEASLPREDQHRLMFEQEVFGRDVMNVVA 630 *****************999999***************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eg +r+er et+++W+ r +aGF++v l+ + +k ++ +++k++ + + v+e+ ++++gWk+r ++S+W+ PK01612.1 631 GEGIKRVERPETYKQWQVRNLRAGFRQVGLDGELVKLVRNMVKKHYHRDFVVDEDGMWMLQGWKGRIFQAMSFWQ 705 **********************************************999*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.61 | 309 | 685 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-107 | 336 | 705 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MDTLFEDLHG SMNNNFRFEH DHHNLDHGFY KGNREFIDPV SPPTNSDLQG EPSPSSGSGS 60 SSEGDSVESS EFSNAIILRF INEVLMDEQE DLEKKPCMLH DCLALQTAEK SFYDVIGEEY 120 PSPLPCLDRN FDVPNDQYVQ SFSTDSSIES ITATSLSNLD VAESNWAWNQ DEVGPFTVQN 180 SIIESPEDTL LTPDSSWHLG GKAVAQGKSG FFLPTKLNGT AFAIQEKNQS HSTTVNGSEG 240 KKGHHRHREF GSDSPEEEEE EGRRTKHTAV YPDFSEPTEI FDEVLLCPKP TLHDKESCGL 300 DEKEDNKPRQ QRKKQQQTKR TKQKKRNSNH GLVDFTSLLT QCAQAVASYD QRTATQLLKQ 360 IKDHSSPHGD ESQRLAYYFA NALEVRLSGG TPSYNHLGSN GASAYDLLKA YQVYITACPF 420 KRMSQIYANR TILKLSEKAN RLHIIDFGVL YGFQWPCLIQ RLSERPGGPP MLRFTGIEFP 480 QTGFRPSERV IQTGRRLANY CERFKVPFEC NMIAQKWETV KIEDLKLDRN ELTVVNCLDR 540 MKNLPDETVI EDCPRDEVLR LIRRINPTLF IHGVLNGNHN APFFLTRFRE ALFHFSALFD 600 MFEASLPRED QHRLMFEQEV FGRDVMNVVA GEGIKRVERP ETYKQWQVRN LRAGFRQVGL 660 DGELVKLVRN MVKKHYHRDF VVDEDGMWML QGWKGRIFQA MSFWQPAXIF RASIAVLRST 720 YYVAFGNECM PQHYTLAXAT GLRIPGILQV INQLMFSSGT DXLEMDPQPQ NNFGNTSVDH 780 NHFAHLAGPF FDAGDLRIFV DAAIHCISPF RISMQIQCIF TAWG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-43 | 314 | 706 | 3 | 380 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 324 | QTKRTKQKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023897035.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A2P5D6F5 | 0.0 | A0A2P5D6F5_TREOI; GRAS transcription factor | ||||
STRING | EMJ12524 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-171 | GRAS family protein |