PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01565.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ZF-HD
Protein Properties Length: 390aa    MW: 43177.3 Da    PI: 7.1164
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01565.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.31.3e-31116172360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++rY+eClkNhAas+Gg+ +DGCgEfmps geeg+ +alkCaAC+CHRnFHR+e + e
    PK01565.1 116 AIRYRECLKNHAASTGGNIYDGCGEFMPS-GEEGSLEALKCAACQCHRNFHRKEIDGE 172
                  689*************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-23117170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.4E-29117169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-30118169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.522119168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.27E-18266332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-29267332IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26271327IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEFRAQDNEM RTSPTGTLTY NTHVSKEGGG GERRSRSVNN NHNHNHNGST NTMSCTNQTL  60
DTNYPPRLSF HNQTGQLHGS RDPDPDRVTT LPITTTFSPS GASANKSSSK TTSSSAIRYR  120
ECLKNHAAST GGNIYDGCGE FMPSGEEGSL EALKCAACQC HRNFHRKEID GESQLYSPSS  180
RRSSSTNATT LMLNALQLPP PLPSPSGFHH HHHHHKYFNH GAPQIIQPMN VAFGGGGAAG  240
TESSSEDLNL YGSTAEAAAA AAAAPPPFGS KKRFRTKFTQ EQKDKMLEFS EKVGWRFQKQ  300
NEEEVERFCA EVGIRRQVLK VWMHNNKSTM MKTKPNNINN NNNNQDMNRV VLMNDDNNMV  360
ASNHHQSSID EVSHNHDDEP VLDQEEVLDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232723291875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102085.11e-126zinc-finger homeodomain protein 5
TrEMBLA0A2P5F6L71e-130A0A2P5F6L7_TREOI; Octamer-binding transcription factor
STRINGXP_010102085.11e-126(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.13e-65homeobox protein 33