PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01421.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25581.5 Da    PI: 10.001
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01421.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRr g+lKKA+EL vLCd++  +iifs++g+lye+s+
  PK01421.1  9 KRIENATSRQVTFSKRRSGLLKKAQELAVLCDVQLGLIIFSQKGRLYEFST 59
               79***********************************************96 PP
2K-box68.52.2e-2377171397
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                ++++k   e+++++l+ e a + k+ie L+ ++R++lG+d++s+s++eL ++e++Le+sl++iR++K++l+ eqie+l+ ke+ l +en++Lr+k
  PK01421.1  77 EQTNKMEVEQHTQRLKLETADMAKKIELLEVSKRKFLGQDISSCSHEELLNIEHRLEQSLRSIRARKEQLFQEQIEKLKAKERLLLQENMQLREK 171
                34444588999**********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.557161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-37160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.74E-39372No hitNo description
PRINTSPR004044.7E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-32389IPR002100Transcription factor, MADS-box
PfamPF003193.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2385171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.84888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVRGKIQMKR IENATSRQVT FSKRRSGLLK KAQELAVLCD VQLGLIIFSQ KGRLYEFSTT  60
DMQNIIERYH KHAKIQEQTN KMEVEQHTQR LKLETADMAK KIELLEVSKR KFLGQDISSC  120
SHEELLNIEH RLEQSLRSIR ARKEQLFQEQ IEKLKAKERL LLQENMQLRE KNTSGENLLR  180
ESMFREKEVV RYWSQSSNST NTEVETGLFI GLPEIRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19190190Myocyte-specific enhancer factor 2B
1tqe_Q2e-19190190Myocyte-specific enhancer factor 2B
1tqe_R2e-19190190Myocyte-specific enhancer factor 2B
1tqe_S2e-19190190Myocyte-specific enhancer factor 2B
6c9l_A2e-19190190Myocyte-specific enhancer factor 2B
6c9l_B2e-19190190Myocyte-specific enhancer factor 2B
6c9l_C2e-19190190Myocyte-specific enhancer factor 2B
6c9l_D2e-19190190Myocyte-specific enhancer factor 2B
6c9l_E2e-19190190Myocyte-specific enhancer factor 2B
6c9l_F2e-19190190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662337.11e-84PREDICTED: MADS-box protein AGL42
RefseqXP_010662338.11e-84PREDICTED: MADS-box protein AGL42
RefseqXP_010662341.11e-84PREDICTED: MADS-box protein AGL42
RefseqXP_010662342.11e-84PREDICTED: MADS-box protein AGL42
SwissprotQ9FIS11e-74AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A2P5D9I71e-106A0A2P5D9I7_PARAD; MADS-box transcription factor
STRINGXP_004308127.11e-80(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.35e-77AGAMOUS-like 42