PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK01144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 246aa MW: 25606.4 Da PI: 8.2102 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.5 | 2.9e-38 | 26 | 84 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprCds ntkfCyynny+l qPr+fCk+CrryWt+GGalr++PvGgg+rkn k+ PK01144.1 26 PEPLPCPRCDSINTKFCYYNNYNLLQPRHFCKGCRRYWTHGGALRDIPVGGGTRKNTKR 84 57899***************************************************886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.4E-32 | 28 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.845 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-21 | 33 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MPSESGDKKQ AARPQLSMGH LPPAHPEPLP CPRCDSINTK FCYYNNYNLL QPRHFCKGCR 60 RYWTHGGALR DIPVGGGTRK NTKRTRSSNS NSSSSSSSSS SMTHDHQLLP SKPLLPDFSL 120 VNTQTDSSAV SQAQVNLNNG SVAGGVGFTS LLNCQAPGGF LALGGFGLGV DEIGLGYGYG 180 GRGVWAFPEV GEFVNGGGGT AVGPGSTSGC NAWQQMNGSD GGLVDGGGDC SYWPDLAISM 240 SGKGLK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220719.1 | 5e-69 | PREDICTED: dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A2P5D9Z5 | 4e-73 | A0A2P5D9Z5_PARAD; Zinc finger, Dof-type | ||||
STRING | XP_008220719.1 | 2e-68 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50410.1 | 4e-30 | OBF binding protein 1 |