PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01070.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 84aa MW: 9406.72 Da PI: 9.8247

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01070.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.8	2.9e-25	3	84	22	103
NAM 22 kvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103 kv+++++++ + ++ vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+l++ +g lvg+k PK01070.1 3 KVSDSSFTC-KPVAVVDLNKSEPWDLPEKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEILRSgSGVLVGMK 84 677777777.77999**********999999*************************************98566678887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.446	1	84	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-26	3	84	IPR003441	NAC domain
Pfam	PF02365	3.9E-6	24	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
ASKVSDSSFT CKPVAVVDLN KSEPWDLPEK ASMGEKEWYF FSLKDRKYPT GLRTNRATEA 60 GYWKTTGKDK EILRSGSGVL VGMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-22	3	84	38	117	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-22	3	84	38	117	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-22	3	84	38	117	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-22	3	84	38	117	NO APICAL MERISTEM PROTEIN
3swm_A	3e-22	3	84	41	120	NAC domain-containing protein 19
3swm_B	3e-22	3	84	41	120	NAC domain-containing protein 19
3swm_C	3e-22	3	84	41	120	NAC domain-containing protein 19
3swm_D	3e-22	3	84	41	120	NAC domain-containing protein 19
3swp_A	3e-22	3	84	41	120	NAC domain-containing protein 19
3swp_B	3e-22	3	84	41	120	NAC domain-containing protein 19
3swp_C	3e-22	3	84	41	120	NAC domain-containing protein 19
3swp_D	3e-22	3	84	41	120	NAC domain-containing protein 19
4dul_A	3e-22	3	84	38	117	NAC domain-containing protein 19
4dul_B	3e-22	3	84	38	117	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269\|PubMed:10079219, ECO:0000269\|PubMed:10750709, ECO:0000269\|PubMed:11245578, ECO:0000269\|PubMed:12163400, ECO:0000269\|PubMed:12492830, ECO:0000269\|PubMed:12610213, ECO:0000269\|PubMed:12787253, ECO:0000269\|PubMed:14617069, ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15500463, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16798887, ECO:0000269\|PubMed:17122068, ECO:0000269\|PubMed:17287247, ECO:0000269\|PubMed:9212461}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16854978, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17287247}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252235.1	4e-44	protein CUP-SHAPED COTYLEDON 1
Refseq	XP_006353806.2	4e-44	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9FRV4	1e-38	NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A2P5DEH7	7e-43	A0A2P5DEH7_PARAD; NAC domain containing protein
STRING	Solyc12g036480.1.1	1e-43	(Solanum lycopersicum)
STRING	PGSC0003DMT400013753	2e-43	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3689	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	4e-43	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Shinohara N,Ohbayashi I,Sugiyama M Involvement of rRNA biosynthesis in the regulation of CUC1 gene expression and pre-meristematic cell mound formation during shoot regeneration. Front Plant Sci, 2014. 5: p. 159 [PMID:24808900] Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci, 2014. 5: p. 165 [PMID:24817871] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Cui X, et al. REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis. Nat. Genet., 2016. 48(6): p. 694-9 [PMID:27111035] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] González-Carranza ZH, et al. HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression. PLoS ONE, 2017. 12(9): p. e0185106 [PMID:28934292]