PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01043.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 280aa    MW: 30645.7 Da    PI: 9.9055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01043.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08177217954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PK01043.1 177 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 217
                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14169232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14172228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6178217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-6191222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDVDMMMKSS SSSSAAVGDH HHNNNNSPNQ NHLDMISIMM QMEKPSPDYC GGATASTPTF  60
LDMNFSEGTT SSPPPPPHHS LYPSSTTPGA ISFLGGGNQI QEPVTPPPYQ QPNAALSGSG  120
VGGRINNPYE KRNSMAAMRE MIFRIAAMQP IHIDPESIKP PKRRNVKISK DPQSVAARHR  180
RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQTLEQVGQA TTNTNRSNNS  240
SAGAVGFPGT HLGNLNYPGF FKACQPYNSS MPDQSLRMLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093634.11e-81transcription factor HEC2
TrEMBLA0A2P5B2J91e-112A0A2P5B2J9_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010093634.15e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-42bHLH family protein