PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00869.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ZF-HD
Protein Properties Length: 308aa    MW: 33688.8 Da    PI: 8.1377
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00869.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.2e-3278134259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++v+Y+eClkNhAas+G++a+DGCgEfmps geegt++alkC+AC+CHRnFHR+eve 
    PK00869.1  78 KGVKYRECLKNHAASMGANATDGCGEFMPS-GEEGTIEALKCSACNCHRNFHRKEVEG 134
                  679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-2580135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.6E-2980132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-3181132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.45282131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.97E-20233302IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-31237303IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-27241297IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELSSHQEGD IPIPLNSTPY GDGGHGHGHL IHHDPSPHNH IIPSSAVAQI IPSNNGSSIP  60
TSLEDHVPYC NNTNNNKKGV KYRECLKNHA ASMGANATDG CGEFMPSGEE GTIEALKCSA  120
CNCHRNFHRK EVEGEPTPYD QFHHSNNINS PHLSRMAAGR KFILGPPHHK GMLGPDSLPG  180
YPTATGTFIP SRTGPMPHHM IMSYNMAGSL PSESDEQEDV GGDGGGGGGG SVAYRPPHLA  240
KKRFRTKFTQ EQKDKMLNFA EKVGWKIQKQ EESVVQQFCQ EIGVKRRVLK VWMHNNKHNL  300
AKKNPPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242422991875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4361187e-47AM436118.2 Vitis vinifera contig VV78X172274.5, whole genome shotgun sequence.
GenBankFQ3834447e-47FQ383444.1 Vitis vinifera clone SS0ABG1YO05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897827.11e-140zinc-finger homeodomain protein 4-like
TrEMBLA0A2P5E9G81e-174A0A2P5E9G8_TREOI; Octamer-binding transcription factor
STRINGVIT_12s0035g01880.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-71homeobox protein 31