PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00827.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 379aa MW: 42700.2 Da PI: 6.7389

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00827.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.7	8.3e-31	234	288	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt++LHe+Fve+ ++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ PK00827.1 234 KSRIRWTQDLHEKFVECANRLGGADKATPKAILKLMETEGLTIFHVKSHLQKYRI 288 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.725	231	291	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	232	288	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-28	232	289	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	234	289	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	238	287	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-19	319	365	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
VDYQERLIQQ NSNGVISDFS FEVGSRRSSQ FLGNMEIWIP QSPAAMDEKF RSHHHQNGVV 60 QAKLSSSSTI MSRFETPASA FYATERCMGF SQYDSQVAFS SPGSQLISSD QSQSETYSTI 120 EDSAHEHPNF DFRNPIPSMA KSQLSTSNIL GSNGQFGYEP NLHVDTSTSV RILPEYCTSY 180 STSPYTQLSF GSHEEEKKQQ CQNISSGNNN ISNNNGCIIT PLNSVLNGAS NSSKSRIRWT 240 QDLHEKFVEC ANRLGGADKA TPKAILKLME TEGLTIFHVK SHLQKYRIAK YLPDSTEGKY 300 DKRTSLNDTT QFETTAGSQM REALQLQLDV QRRLHEQLEI QRNLQLQIEE QGKQLKKMFD 360 MQQKTSNSFF KSQSSDITS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

VDYQERLIQQ NSNGVISDFS FEVGSRRSSQ FLGNMEIWIP QSPAAMDEKF RSHHHQNGVV  60
QAKLSSSSTI MSRFETPASA FYATERCMGF SQYDSQVAFS SPGSQLISSD QSQSETYSTI  120
EDSAHEHPNF DFRNPIPSMA KSQLSTSNIL GSNGQFGYEP NLHVDTSTSV RILPEYCTSY  180
STSPYTQLSF GSHEEEKKQQ CQNISSGNNN ISNNNGCIIT PLNSVLNGAS NSSKSRIRWT  240
QDLHEKFVEC ANRLGGADKA TPKAILKLME TEGLTIFHVK SHLQKYRIAK YLPDSTEGKY  300
DKRTSLNDTT QFETTAGSQM REALQLQLDV QRRLHEQLEI QRNLQLQIEE QGKQLKKMFD  360
MQQKTSNSFF KSQSSDITS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021830660.1	1e-124	myb family transcription factor PHL5 isoform X2
Swissprot	Q0WVU3	1e-69	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A2P5BTX8	1e-153	A0A2P5BTX8_PARAD; Octamer-binding transcription factor
STRING	XP_010102554.1	1e-116	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-70	G2-like family protein