PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00778.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 397aa MW: 43856.8 Da PI: 9.5013

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00778.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PK00778.1 82 FICEICNKGFQRDQNLQLHRRGH 104 89*******************88 PP
2	zf-C2H2	13.1	0.00028	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PK00778.1 158 WKCDKCSKRYAVQSDWKAHSKTC 180 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.0E-5	81	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.33E-7	81	104	No hit	No description
SMART	SM00355	0.022	82	104	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	4.5E-5	82	104	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	82	104	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	123	153	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	146	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.33E-7	153	178	No hit	No description
SMART	SM00355	140	158	178	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDENNMSNLT SAASGDQTSV SSSGNRAEIG TNNGFSHQYF ASPPPHQSQP PPKKKRNLPG 60 NPDPDAEVIA LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVKK 120 KVYVCPEASC VHHEPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC 180 GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAINGG PVLPGSVGTN PLGSSSSAIL 240 SHLNLQTQLL NNHNHHHNLH HQDLVHSFSL KKEQQNFTTT ATTAATPSGN NNNLIRQDHN 300 LPPWLACSPT QIDLTNSSSS IFSPRSLDQE NLNLLNSPNP NPSSLVPNLP PHHYQPQPSA 360 HMSATALLQK AAQIGATMSN NNNNNNNSTN NKNNNDT

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDENNMSNLT SAASGDQTSV SSSGNRAEIG TNNGFSHQYF ASPPPHQSQP PPKKKRNLPG  60
NPDPDAEVIA LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVKK  120
KVYVCPEASC VHHEPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAINGG PVLPGSVGTN PLGSSSSAIL  240
SHLNLQTQLL NNHNHHHNLH HQDLVHSFSL KKEQQNFTTT ATTAATPSGN NNNLIRQDHN  300
LPPWLACSPT QIDLTNSSSS IFSPRSLDQE NLNLLNSPNP NPSSLVPNLP PHHYQPQPSA  360
HMSATALLQK AAQIGATMSN NNNNNNNSTN NKNNNDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	154	215	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-36	154	215	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023882791.1	1e-161	protein indeterminate-domain 7 isoform X1
Refseq	XP_023882792.1	1e-162	protein indeterminate-domain 7 isoform X2
Swissprot	Q8H1F5	1e-120	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2P5FEE6	1e-173	A0A2P5FEE6_TREOI; TFIIH C1-like domain containing protein
STRING	XP_009341045.1	1e-160	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-116	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]