PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00738.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 293aa MW: 32086.3 Da PI: 6.6684

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00738.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar Rt+ q+ s+ qky PK00738.1 99 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 143 8***************************89**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.612	92	148	IPR017930	Myb domain
SuperFamily	SSF46689	7.18E-17	94	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-19	95	147	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.4E-11	96	142	IPR009057	Homeodomain-like
SMART	SM00717	8.0E-11	96	146	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-11	99	143	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-9	99	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0030307	Biological Process	positive regulation of cell growth
GO:0046686	Biological Process	response to cadmium ion
GO:0048366	Biological Process	leaf development
GO:2000469	Biological Process	negative regulation of peroxidase activity
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTRRCSYCCH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSHYAGS GSGALQGGPN 60 VPGSPGDTPD HGAAADGYAS EDFVPGSSSS CRERKKGVPW TEEEHRMFLL GLQKLGKGDW 120 RGIARNYVIS RTPTQVASHA QKYFIRQTNV SRRKRRSSLF DIIADEAADA SMVPRDFLSV 180 NHPQQEVQSD NTLPDPPALD EECESMDSTN SNDGEPAPPK LDNSPQSCYP VIYPAYISPF 240 FPYPVPVWSH YDNDTDVNKE THEVLKPTAV HSKSPINVDE LVGMSKLSLG ESX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00551	DAP	Transfer from AT5G47390	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR751554	0.0	FR751554.1 Humulus lupulus mRNA for myb transcription factor (myb4 gene), cultivar Osvald's 72, clone 3363.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022965098.1	1e-179	transcription factor MYBS3
Refseq	XP_023552452.1	1e-178	transcription factor MYBS3
Swissprot	Q9LVS0	1e-129	KUA1_ARATH; Transcription factor KUA1
TrEMBL	G7ZLA3	0.0	G7ZLA3_HUMLU; Myb transcription factor
STRING	XP_008448819.1	1e-178	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7230	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-131	MYB_related family protein

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]