PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00728.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Nin-like

Protein Properties

Length: 962aa MW: 105715 Da PI: 4.9772

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00728.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.6e-29	596	647	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ PK00728.1 596 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	581	667	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.91E-22	860	946	No hit	No description
PROSITE profile	PS51745	20.672	862	944	IPR000270	PB1 domain
SMART	SM00666	3.0E-20	862	944	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-24	862	944	No hit	No description
Pfam	PF00564	2.7E-17	865	943	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MEPFSPKEGD NDYWSSPSEQ VESFPSFDGV PRDMLSEDVF NSFSELLSFD TYVGWSSNPA 60 VTDQVSATYG LASLPPTIYT PQNTSDFIEQ TVEALPVAEV GGNLDLPRGS FNYGDKAVFL 120 PEDTQLEASA HSNNGSDLVA TQNTDFLENG EMDVENSTVP RPVRLSLDEK MLKALSFVKA 180 SSGMGILAQV WVPVRRGDEL LLSTSDQPYL LDNMLVGYRE VSRRFTFSVE GKQGCVLGLP 240 GRVFQSKIPE WTSNVAYYKK NEYVRVEHAY NHQVRGCIAL PVCEPDLGVT CCAVLEIVTT 300 NEKPNFDAEI EIVCNALQAV NLKMSQPLRL NPQCLSKNQK DALAEIIDVL RAVCHAHRLP 360 LALTWIPCNS EGTSNEVAGV CVGDGKTSST EKCILCVEKA ACYVNDRLMQ GFASACVEHH 420 LEVGQGLAGK ALQSNLPFFF PDVKTYDISD YPLVHHARKF GLNAAVAIRL RSTYTGDCDY 480 ILEFFLPVNM KGASEQQLLL NNLSGTMQRI CKSLRTVSDV EIGIASHDTF KEDSVPNFIP 540 LPGESSNMVQ LDGDLNSTNE VPLKLAERRN EAHKVDNVHE QPRGTRWQAE KKRSTAEKNV 600 SLSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKF DPTTGGLVAA GSISQEYESQ KKIASLQNLD PSFTVKLEED ECYTDGVNLN 720 SYKIRKPNII APTNSNKDSK IAIEAGSKPI SGTFSEKISL GSYPATEGMT SSHSKCSSKF 780 ENSDARHVSR NSSSLAVGDE MDTSEDGEDD ELLQHNQPAS SSMTDSSNGC GSLLHGSSSS 840 SQSFEERKHP KGKASCADSY SKIIVKATYK EDTVRFKFDT SAGCYQLYEE VAKRFKLHTG 900 AFQLKYLDDE EEWVMLVSDM DLQECLEILD DVGTRSVKFQ VRDMPCVVGS SGSSNCFLPG 960 GT

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MEPFSPKEGD NDYWSSPSEQ VESFPSFDGV PRDMLSEDVF NSFSELLSFD TYVGWSSNPA  60
VTDQVSATYG LASLPPTIYT PQNTSDFIEQ TVEALPVAEV GGNLDLPRGS FNYGDKAVFL  120
PEDTQLEASA HSNNGSDLVA TQNTDFLENG EMDVENSTVP RPVRLSLDEK MLKALSFVKA  180
SSGMGILAQV WVPVRRGDEL LLSTSDQPYL LDNMLVGYRE VSRRFTFSVE GKQGCVLGLP  240
GRVFQSKIPE WTSNVAYYKK NEYVRVEHAY NHQVRGCIAL PVCEPDLGVT CCAVLEIVTT  300
NEKPNFDAEI EIVCNALQAV NLKMSQPLRL NPQCLSKNQK DALAEIIDVL RAVCHAHRLP  360
LALTWIPCNS EGTSNEVAGV CVGDGKTSST EKCILCVEKA ACYVNDRLMQ GFASACVEHH  420
LEVGQGLAGK ALQSNLPFFF PDVKTYDISD YPLVHHARKF GLNAAVAIRL RSTYTGDCDY  480
ILEFFLPVNM KGASEQQLLL NNLSGTMQRI CKSLRTVSDV EIGIASHDTF KEDSVPNFIP  540
LPGESSNMVQ LDGDLNSTNE VPLKLAERRN EAHKVDNVHE QPRGTRWQAE KKRSTAEKNV  600
SLSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVEGGLKF DPTTGGLVAA GSISQEYESQ KKIASLQNLD PSFTVKLEED ECYTDGVNLN  720
SYKIRKPNII APTNSNKDSK IAIEAGSKPI SGTFSEKISL GSYPATEGMT SSHSKCSSKF  780
ENSDARHVSR NSSSLAVGDE MDTSEDGEDD ELLQHNQPAS SSMTDSSNGC GSLLHGSSSS  840
SQSFEERKHP KGKASCADSY SKIIVKATYK EDTVRFKFDT SAGCYQLYEE VAKRFKLHTG  900
AFQLKYLDDE EEWVMLVSDM DLQECLEILD DVGTRSVKFQ VRDMPCVVGS SGSSNCFLPG  960
GT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031921.1	0.0	protein NLP8
Refseq	XP_024031922.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2P5G0I9	0.0	A0A2P5G0I9_TREOI; NIN-like transcription factor
STRING	XP_010112531.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]