PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 296aa MW: 31766.3 Da PI: 4.4417 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 269 | 292 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H PK00570.1 269 FSCTTCNRSFGSDIALQSHSKAkH 292 89*****************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.074 | 269 | 296 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 271 | 292 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
XFVVWCLGLV VKSGKSEVVE HDGSFLHIAK VCLGEIKKDA GSEPVILTAK VGDQKFVIGR 60 LSQKIPQLSV DLVFEKSFEL SHNCKNGSVH FTGYIVENSN SESESDSEDK NVPISIDNGV 120 VSGNLQSGED ENVAKSNKVL NSGQRGSSGP CGDEENDSSS DDDYNIEDEE QVNDDEKSSE 180 DEDESDDEDG SGDEESDDSE EDEGEEKKVD MGKKRPAETA TPATFKKAKL VTPEKTDSKS 240 GGSKVRSHVA TPHPAKQAKT TAAIFGKAFS CTTCNRSFGS DIALQSHSKA KHAPAK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021650.1 | 1e-61 | histone deacetylase HDT1 | ||||
TrEMBL | A0A2P5C4V3 | 6e-90 | A0A2P5C4V3_PARAD; Zinc finger C2H2 domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 3e-18 | histone deacetylase 3 |