PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 296aa    MW: 31766.3 Da    PI: 4.4417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00570.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054269292123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                ++C+ C++sF +   L++H +  H
  PK00570.1 269 FSCTTCNRSFGSDIALQSHSKAkH 292
                89*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.074269296IPR007087Zinc finger, C2H2
PROSITE patternPS000280271292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
XFVVWCLGLV VKSGKSEVVE HDGSFLHIAK VCLGEIKKDA GSEPVILTAK VGDQKFVIGR  60
LSQKIPQLSV DLVFEKSFEL SHNCKNGSVH FTGYIVENSN SESESDSEDK NVPISIDNGV  120
VSGNLQSGED ENVAKSNKVL NSGQRGSSGP CGDEENDSSS DDDYNIEDEE QVNDDEKSSE  180
DEDESDDEDG SGDEESDDSE EDEGEEKKVD MGKKRPAETA TPATFKKAKL VTPEKTDSKS  240
GGSKVRSHVA TPHPAKQAKT TAAIFGKAFS CTTCNRSFGS DIALQSHSKA KHAPAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021650.11e-61histone deacetylase HDT1
TrEMBLA0A2P5C4V36e-90A0A2P5C4V3_PARAD; Zinc finger C2H2 domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-18histone deacetylase 3