PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 123aa MW: 13768.6 Da PI: 4.6512 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 103 | 4.3e-32 | 2 | 120 | 79 | 195 |
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 a++l+++++P++ ++ ++aN+aI +a+ +++ +HiiD+++++ lQWp+L+++LasR+eg+p +lRiTg+ +++++ el++ + L + A++lgv+++ PK00466.1 2 EAFQLLYQTTPFIALGCMIANEAICQAATNKDYLHIIDLGMEHTLQWPSLIRTLASRQEGSPkQLRITGLIDEDQTLVAELKTSMNSLVEEANSLGVTLK 101 6899******************************************************88777*********9999************************ PP GRAS 178 fnvlvak.rledleleeLr 195 fn++ ++ + + ++ e+L+ PK00466.1 102 FNLISEQvTPSLFTKEKLD 120 **97444355556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.692 | 1 | 123 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-29 | 2 | 120 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
IEAFQLLYQT TPFIALGCMI ANEAICQAAT NKDYLHIIDL GMEHTLQWPS LIRTLASRQE 60 GSPKQLRITG LIDEDQTLVA ELKTSMNSLV EEANSLGVTL KFNLISEQVT PSLFTKEKLD 120 LRX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089231.1 | 2e-57 | DELLA protein RGL1 | ||||
TrEMBL | A0A2P5CB90 | 5e-60 | A0A2P5CB90_TREOI; GRAS transcription factor | ||||
STRING | XP_010089231.1 | 9e-57 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13251 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 2e-16 | GRAS family protein |