PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 120aa MW: 14394 Da PI: 7.711 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.2e-10 | 1 | 28 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 lG++ W++Ia +++ gRt++++k++w+++l PK00358.1 1 LGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 28 7999.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 1 | 28 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-8 | 1 | 28 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.936 | 1 | 32 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.12E-9 | 2 | 36 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-6 | 3 | 28 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
LGNRWSLIAG RLPGRTDNEI KNYWNSHLSK KIMKQNKEKQ TKKKKKLAQE MIKEVNHNYH 60 NDYNHNHNGY YDNDIGCSKR NEIISIFDQD SYYLNSTLWD EPLNLEWMSN FLEVDETNNN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 46 | KKIMKQNKEKQTKKKKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017979498.1 | 5e-25 | PREDICTED: transcription factor MYB114 | ||||
TrEMBL | A0A061GJK0 | 1e-23 | A0A061GJK0_THECC; Myb domain protein 23 | ||||
STRING | EOY27239 | 2e-24 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-14 | myb domain protein 82 |