PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00238.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 287aa    MW: 32296.3 Da    PI: 6.6315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00238.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-131759248
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48
               r +h+e E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++
  PK00238.2 17 RSKHSETEQRRRSKINERFQILRELIPQS----DQKRDKASFLLEVI 59
               899*************************9....8*******998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-2012116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-121260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-111359No hitNo description
PROSITE profilePS5088813.8651565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-111759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
VTHNKGKVDG KSREKNRSKH SETEQRRRSK INERFQILRE LIPQSDQKRD KASFLLEVIV  60
CMYKAYDDNI FSVRIHVFCS LCMQLIEYVQ YLQEKINMYE ESYQGWNSEP AKLHPWRNQH  120
APTETFVDLS QAVKNGSDLP NNVVISPSLL PSQQNSLESD MNVAMAYKTL DHLPGSATLS  180
VPPNVQQTNM FDPSGRHGVP MQPMQESVSD DSEVDPLPQP LPELWQGGRT TASSLLNNAL  240
SIKEGKNGSL TMSNSYSQGV FDSLKQALRS SGVDLSQTRI SVQIDVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023288.11e-114LOW QUALITY PROTEIN: transcription factor BIM3
TrEMBLA0A2P5E9A71e-133A0A2P5E9A7_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ169018e-96(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-42BES1-interacting Myc-like protein 2