PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00238.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 328aa    MW: 36734.6 Da    PI: 5.6344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00238.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-163483255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h+e E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L + +eY+++Lq
  PK00238.1 34 RSKHSETEQRRRSKINERFQILRELIPQS----DQKRDKASFLLELIEYVQYLQ 83
               899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-2229106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1829103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-143086No hitNo description
PROSITE profilePS5088816.4063282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-143483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-103888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVESSRGHQE EFEDEEEVTH NKGKVDGKSR EKNRSKHSET EQRRRSKINE RFQILRELIP  60
QSDQKRDKAS FLLELIEYVQ YLQEKINMYE ESYQGWNSEP AKLHPWRNQH APTETFVDLS  120
QAVKNGSDLP NNVVISPSLL PSQQNSLESD MNVAMAYKTL DHLPGSATLS VPPNVQQTNM  180
FDPSGRHGVP MQPMQESVSD DSEVDPLPQP LPELWQGGRT TASSLLNNAL SIKEGKNGSL  240
TMSNSYSQGV FDSLKQALRS SGVDLSQTRI SVQIDVANQT DSGLTSIASS SKDHANLSLN  300
SQVMANNQVT STDDKFDRAH KRLRIGEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023288.11e-154LOW QUALITY PROTEIN: transcription factor BIM3
TrEMBLA0A2P5E9A70.0A0A2P5E9A7_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008230307.11e-121(Prunus mume)
STRINGXP_009373761.11e-121(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-51BES1-interacting Myc-like protein 2