PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00037.3
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 343aa    MW: 39523.1 Da    PI: 9.0524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00037.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1569162295
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ++   +++ ++ +vlp kf+e++ +kke+  +++l  ++gr W v+l++   +   r  l +GW+eF+ +n L++ D++ F+l+ +++ e  +k
  PK00037.3  69 TVIMHETYATGRCYFVLPYKFVEKYIKKKEC--EVRLWLPDGRCWFVQLKVrqANACPRAELCRGWREFALDNSLQASDICKFELTIDNGNEVSFK 162
                556667788999*************877777..7***************876644555578889********************985555555554 PP
2B338.32.4e-12256342697
                ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ++s++     l +p kfa ++ +gk     +++      + W+vkl + k+  +y +++GW  F+ +n L  +D+++F+l++++++e++v++f
  PK00037.3 256 LRSNHVYGFKLPFPSKFAIQYlEGK----AKVMSLWVGEKYWDVKLMHFKS--SYEFGAGWAAFAVENFLMPKDVCIFELINNNQAEMKVHIF 342
                4566666677999*****9995433....2466566677*******55555..588***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2159165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2161165IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-2066167No hitNo description
SMARTSM010192.2E-868165IPR003340B3 DNA binding domain
PROSITE profilePS5086312.68968169IPR003340B3 DNA binding domain
PfamPF023625.9E-1368161IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-17246342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-17247342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.743251343IPR003340B3 DNA binding domain
CDDcd100171.01E-11251342No hitNo description
SMARTSM010190.013252343IPR003340B3 DNA binding domain
PfamPF023622.0E-10252342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
XGDVCAFVLR ESIGIMLFEV LIFCGNGVQN SAMPKSCNNT MMINRRSGLK QTTVLERGSS  60
SQSERPSFTV IMHETYATGR CYFVLPYKFV EKYIKKKECE VRLWLPDGRC WFVQLKVRQA  120
NACPRAELCR GWREFALDNS LQASDICKFE LTIDNGNEVS FKVSIEKDHD DDDAYNMKVA  180
NKRKAITPSK LERNPYVKVE SSFAHHNMNI KKEQVEIKVE PNISDMSMKL KSDNQGRASK  240
VASKFFSNNP YFHVVLRSNH VYGFKLPFPS KFAIQYLEGK AKVMSLWVGE KYWDVKLMHF  300
KSSYEFGAGW AAFAVENFLM PKDVCIFELI NNNQAEMKVH IFX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1623034227140B3 domain-containing transcription factor VRN1
4i1k_B8e-1623034227140B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1754236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-18related to vernalization1 1