PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00037.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 429aa    MW: 49079.7 Da    PI: 9.958
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00037.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16146235188
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                f   + ps v+++ ++v+p  f++ +  +++  +s++++l+ ++gr+W+vk+ +    +s+r  +++GWkeF+ +n+L++gD++ F l + s
  PK00037.1 146 FMVFMQPSFVGAKYNMVIPFLFTKYYllSSI-SNSQDVILKIQDGRTWSVKYYVtlAEGSRRARFETGWKEFAVDNNLNVGDICAFVLRK-S 235
                555677888999999********77798444.46789***************4488999999************************9754.4 PP
2B354.32.5e-17310406197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                f  +++ ++++ ++ lvlp kf++e+ ++ke+  +++l  ++gr W v+l++r+  +r    l +GW+ F+ +n L++gD+++F+l+ +++ e  +kvf
  PK00037.1 310 FTATMSDAYATGRCYLVLPCKFVKEYINNKEC--EVRLLVLDGRCWFVQLKVRQINQRptAELCRGWRAFALENSLRAGDICTFELTIDNGNEVSFKVF 406
                677899999999**************888777..7***************997766674466779********************99777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.432142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-8253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-6249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-20139247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20140247IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-19144243No hitNo description
SMARTSM010197.4E-9146250IPR003340B3 DNA binding domain
PfamPF023629.7E-15146234IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987146247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-21301410IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-21305408IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-20308407No hitNo description
SMARTSM010193.3E-12310407IPR003340B3 DNA binding domain
PfamPF023621.7E-14310406IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662310411IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
GKVWIEKGWN ILAQNCSLSR GNLLVFRYEG KSQFHVIIFD ITTTEIDYSS HFEKHNVVDF  60
DEDEDSIKVL ENRGKSPIPC TARPHKKMNT KSKVMKWDLS DKECGESSLP RWMEPEYFLG  120
KQKLNAKDRA EAVKRAKGFK SKDPFFMVFM QPSFVGAKYN MVIPFLFTKY YLLSSISNSQ  180
DVILKIQDGR TWSVKYYVTL AEGSRRARFE TGWKEFAVDN NLNVGDICAF VLRKSIGVML  240
FEVVTFCGNY GVVNSPMLPE LNGRTKGSQS CKVESCDIVN KRNGLKPFIS FAKTSAHKGP  300
SSSQTKRPSF TATMSDAYAT GRCYLVLPCK FVKEYINNKE CEVRLLVLDG RCWFVQLKVR  360
QINQRPTAEL CRGWRAFALE NSLRAGDICT FELTIDNGNE VSFKVFIDKK KVANKRRTIT  420
PSKRKRNPC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408425KKKVANKRRTITPSKRKR
2414425KRRTITPSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FXY31e-101A0A2P5FXY3_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-28B3 family protein