PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028647m
Common NameCARUB_v10028647mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 223aa    MW: 24195.9 Da    PI: 7.0957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028647mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.9e-2176126256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Carubv10028647m  76 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 126
                      7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.69976133IPR001471AP2/ERF domain
SMARTSM003803.8E-3776139IPR001471AP2/ERF domain
PfamPF008471.4E-1476125IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2376134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3376134IPR001471AP2/ERF domain
PRINTSPR003674.1E-127788IPR001471AP2/ERF domain
CDDcd000181.98E-1584135No hitNo description
PRINTSPR003674.1E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSAMVSALTQ VVSGRSQTET EGAHSSSSSA GHRRGWLGID SAPILSSFAP LESSLGPIEE  60
PTSKAVPEEA REKRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFDTAE AAARAYDEAA  120
LRFRGNKAKL NFPEDVRLLP HPPPPPPPPL LFPADTVAKK AEEDLINYWS YSKLLQSSGQ  180
ESFFGQGQEE SSNTLEHSPM EQPLRPSSSG PSSSDFSGPS SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2373136266ATERF1
3gcc_A3e-2373136266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176EKRRRY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028647m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282350.11e-159ethylene-responsive transcription factor ERF110 isoform X1
SwissprotQ70II32e-94EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLR0GVP21e-158R0GVP2_9BRAS; Uncharacterized protein
STRINGXP_006282350.11e-158(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-82ethylene response factor 110