PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028625m | ||||||||
Common Name | CARUB_v10028625mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25538.9 Da PI: 7.0579 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 151 | 191 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq Carubv10028625m 151 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 191 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.831 | 141 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 146 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 147 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.55E-12 | 150 | 195 | No hit | No description |
Pfam | PF00010 | 7.8E-9 | 151 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MENEAFVVDG ELESLLGIFN FEQCSSNESI FYNAPHSETD AYSSDDFFPF GTILQRNYPA 60 VLDGSNFQTN LYVDSRQELM KPRKKQKLSS ESILVVTEPK STSRDGQTLS SYNCSDDEKA 120 LGLVAYTSRN LKGKAKSKKG IASDPQSLYA RKRRERINDR LKTLQSLVPN GTKVDISTML 180 EDAVHYVKFL QLQIKLLSSD DLWMYAPLAH NGLNMGLHHN LLSRLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028625m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023030 | 2e-55 | AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5. | |||
GenBank | CP002688 | 2e-55 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282332.1 | 1e-168 | transcription factor bHLH139 | ||||
Swissprot | Q3E7L7 | 1e-136 | BH139_ARATH; Transcription factor bHLH139 | ||||
TrEMBL | R0GSB0 | 1e-167 | R0GSB0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282332.1 | 1e-168 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43175.1 | 1e-115 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028625m |
Entrez Gene | 17874597 |
Publications ? help Back to Top | |||
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