PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028582m
Common NameCARUB_v10028582mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 366aa    MW: 41670 Da    PI: 7.4383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028582mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002311333123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C+ +F ++  +  H+  H
  Carubv10028582m 311 YTCPKCNCVFDTSQKFSAHMLFH 333
                      9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.974311338IPR007087Zinc finger, C2H2
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSSNPNMFNI DGDHFINHGE LFPLQMNQNS RMFRSMFTTD DHMNYENFFA STPYFSSYQN  60
SQISSSSFPF SIGSVSRARY FPNNIFDSVQ HEIDRVNLLN PPPISLVYPD QDPAAPRQFS  120
AHYSVAPRHT GPPQYSAAPH YYASLDHPVV PQHFAIPPHL TSPHHFATPR HSIAPNNSAT  180
PHLFVSPHHI AAPHRSNMFS FSANDNHILN PSPIRVVYPD QDPTAPHHFR DPHYSTATPH  240
SADPHHFTTP HQFTAPHHFG APDHFAALDH LDIFSSSSSG NHLSQEEDEE SDDDEYDGRT  300
HSIPCKKKGP YTCPKCNCVF DTSQKFSAHM LFHYKSETSK EKDRRLRARN KKKYRKFMAS  360
LRRTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028582m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281471.28e-70soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
TrEMBLR0GEM80.0R0GEM8_9BRAS; Uncharacterized protein
STRINGXP_006282296.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.16e-30C2H2 family protein